RNA id: TU64909



Basic Information


Item Value
RNA id TU64909
length 849
lncRNA type sense_over
GC content 0.47
exon number 4
gene id CI01000009_09908895_09911939
representative True

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 9908583 ~ 9912038 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGTCTTTATATATGCAAATATACTGAAGCCTGTCCCTCACAAGAGGATCATCACTTTTGGGTGGGGGGTTCACATCAAATTTTTTGAAAACCACTGCAGTAGAGGAAGGCAATGAAATAATGGGCAGAAGTAGTAGGAAATATTGCGAGCTGGATTCAAATTTGCACTGCCTGTATGAGCACTTGTGTTTGAGCATGTCTTGTTATGCACTGTCTGTTTGTATGGATCCCTCTGGCTCTCTGTACAGGATCCGGCAAATTCCCAGGAGGTGTACGGGACCCCAGCTAATACCCTGGACCCGTCGATCAGCTGGAAGGATGTGAACTGGCTCCAGTCTCTAACACGATTGCCTATAATCATCAAGGGCATTCTTACTAAAGAGGATGCAGAGCTGGCTGTAGAGCATGGCGTCCAGGGAATAATCGTGTCTAATCATGGAGGCCGACAACTGGATGGAGGGCCCGCATCTATAGATTGTCTGCCTGAGATAGTGGACACAGTGCAGGGCCGGATCGAGGTCTACATGGACGGAGGGATCCGTACAGGCAATGACGTGCTGAAGGCCATAGCCTTGGGAGCCAAATGTGTGTTCATTGGCAGACCAGCAATCTGGGGTCTCGCTTACAAGGGGGAGGAAGGAGTGAAAGAGATCCTACAGATACTACATGATGAGTTTCGTTTATCCATGGCGCTGTCAGGTTGCAGAAATGTTGCTGAGATCAGCAGGAACCTCATTCAGTTCTCCAGACTCTGAACAGCAAAAAGGACTCTAGTAATTTCTTCTTTAACACTGAGAGCACTGCAAAGGTTCACTTTATCCACTATTAATACTAAATGTATTTAGAAAAC

Function


GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K11517 HAO; (S)-2-hydroxy-acid oxidase

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU64976 lncRNA downstream 33083 9873338 ~ 9875717 (-) True G57042
TU65147 lncRNA downstream 136292 9771719 ~ 9772508 (-) True G57180
TU65146 lncRNA downstream 139668 9766774 ~ 9769132 (-) True G57179
TU65143 lncRNA downstream 154691 9753748 ~ 9754109 (-) True G57176
TU65052 lncRNA downstream 339141 9557639 ~ 9569659 (-) True G57114
TU65158 lncRNA upstream 4707 9915188 ~ 9915459 (-) True G57189
TU65187 lncRNA upstream 53849 9964330 ~ 9964556 (-) True G57210
TU65196 lncRNA upstream 75592 9986073 ~ 9986491 (-) True G57219
TU65207 lncRNA upstream 90680 10001161 ~ 10003496 (-) True G57226
TU65209 lncRNA upstream 109600 10020081 ~ 10020301 (-) True G57228
CI01000009_09900049_09906784.mRNA mRNA downstream 2016 9899709 ~ 9906784 (-) True CI01000009_09900049_09906784
CI01000009_09895304_09897877.mRNA mRNA downstream 10796 9895156 ~ 9898004 (-) True CI01000009_09895304_09897877
CI01000009_09884586_09891558.mRNA mRNA downstream 17242 9884580 ~ 9891558 (-) True CI01000009_09884586_09891558
CI01000009_09866875_09870401.mRNA mRNA downstream 38336 9866565 ~ 9870464 (-) True CI01000009_09866875_09870401
CI01000009_09855740_09859027.mRNA mRNA downstream 49773 9855740 ~ 9859027 (-) True CI01000009_09855740_09859027
CI01000009_10089124_10102162.mRNA mRNA upstream 177456 10087937 ~ 10102162 (-) True CI01000009_10089124_10102162
CI01000009_10137314_10138474.mRNA mRNA upstream 226610 10137091 ~ 10139525 (-) True CI01000009_10137314_10138474
CI01000009_10149267_10242850.mRNA mRNA upstream 238786 10149267 ~ 10242850 (-) True CI01000009_10149267_10242850
CI01000009_10250936_10259244.mRNA mRNA upstream 340415 10250896 ~ 10259244 (-) True CI01000009_10250936_10259244
CI01000009_10261399_10263994.mRNA mRNA upstream 350119 10260600 ~ 10263994 (-) True CI01000009_10261399_10263994
TU64878 other downstream 1048237 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 1480788 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 4403552 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 5677331 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 6646843 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 2377736 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 2377736 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 4064907 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 4123083 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 4951916 14862397 ~ 14887464 (-) True G59811

Expression Profile


TU64909 Expression in PRJCA010000

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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TU64909 Expression in each Bioproject

Bar chart with 32 bars.
TU64909 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 5000.
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