RNA id: CI01000009_10268535_10269640.mRNA



Basic Information


Item Value
RNA id CI01000009_10268535_10269640.mRNA
length 621
RNA type mRNA
GC content 0.36
exon number 2
gene id CI01000009_10268535_10269640
representative True

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 10268535 ~ 10269784 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGACCATTATTACAATCTACAAAAACTGGTCACAGTTTTTTGGTTACATCTGCATAGCTGTTGGTTTCTTTGGATGGTGGCTGATATCAAACACCAAGGTTGGGATTTATTGTGTCAGATGTTCTTGTCAGTGTTTGAAGGACTGTTGCTGCAAGAGCTGTAACAACTCCCCCACCTGTCAGAGTTTGAAGGACTGCTGCTGCAAAATTAAACCATACTACGAGAGGCGGTATGAGGAGCTTGTGTCTGTGGAAACGGATAAACACCTGGACAAAAAATTGCAAAAAATAGCCAAAAAGAAAGCAAAAAGGATATGTTCAAATTACATTAATGTTATTGAAAATAGTGAGTCTAACACAACCACACGAATGTCTGAAGAGGCTAGGATGGCTTTGTCTGAAATATCTCGCCCAAATTTTTATAGGCCTACATCAGATCTTTCTGAAAATGTGAACAACGAGGGCACGTCTGTTTGATATAATTTGTCGCATTTGTAACAATAATTCATCTAGAGGATAGGCCTATGTGTATTTATTTATTTTTGAAAAGAAAGTCATTAAAAAAATCAAAATTTGACATTGTTTTCTGAATTAAATTCTAAATCATCCACTACAACAAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU64214 lncRNA upstream 8875 10258528 ~ 10259660 (+) True G56392
TU64166 lncRNA upstream 133106 10052050 ~ 10135429 (+) True G56349
TU64297 lncRNA upstream 210003 10058274 ~ 10058532 (+) True G56456
TU64275 lncRNA upstream 248192 10020106 ~ 10020343 (+) True G56439
TU64249 lncRNA upstream 351362 9916869 ~ 9917173 (+) True G56417
TU64353 lncRNA downstream 13289 10283073 ~ 10284524 (+) True G56507
TU64356 lncRNA downstream 19066 10288850 ~ 10289512 (+) True G56509
TU64387 lncRNA downstream 20675 10290459 ~ 10292559 (+) False G56540
TU64388 lncRNA downstream 22231 10292015 ~ 10292559 (+) True G56540
TU64215 lncRNA downstream 33698 10303482 ~ 10304485 (+) True G56393
CI01000009_10103558_10119209.mRNA mRNA upstream 149315 10103558 ~ 10119220 (+) True CI01000009_10103558_10119209
CI01000009_09967529_09989449.mRNA mRNA upstream 279068 9967384 ~ 9989467 (+) True CI01000009_09967529_09989449
CI01000009_09952526_09962840.mRNA mRNA upstream 304256 9952526 ~ 9964279 (+) True CI01000009_09952526_09962840
CI01000009_09878612_09881564.mRNA mRNA upstream 386641 9878612 ~ 9881894 (+) True CI01000009_09878612_09881564
CI01000009_09866000_09866290.mRNA mRNA upstream 402141 9865723 ~ 9866394 (+) False CI01000009_09866000_09866290
CI01000009_10319216_10329706.mRNA mRNA downstream 49432 10319216 ~ 10329836 (+) True CI01000009_10319216_10329706
CI01000009_10338738_10339712.mRNA mRNA downstream 68954 10338738 ~ 10339774 (+) True CI01000009_10338738_10339712
CI01000009_10341830_10347798.mRNA mRNA downstream 72046 10341830 ~ 10348005 (+) True CI01000009_10341830_10347798
CI01000009_10361969_10374788.mRNA mRNA downstream 92185 10361969 ~ 10375458 (+) True CI01000009_10361969_10374788
CI01000009_10376105_10382009.mRNA mRNA downstream 106321 10376105 ~ 10382284 (+) True CI01000009_10376105_10382009
TU64139 other upstream 411948 9853359 ~ 9853515 (+) True G56323
TU63847 other upstream 1138249 9129300 ~ 9130286 (+) True G56100
TU61103 other upstream 4020143 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 4335734 5860302 ~ 5860756 (+) True G53655
TU60791 other upstream 4729481 5535245 ~ 5538095 (+) False G53388
TU65813 other downstream 1491002 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 1664158 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 1664158 11933942 ~ 11935251 (+) False G57811
TU65846 other downstream 1664158 11933942 ~ 11935251 (+) True G57811
TU65746 other downstream 2162774 12432558 ~ 12433084 (+) False CI01000009_12432736_12435509

Expression Profile