RNA id: CI01000009_10631280_10637275.mRNA


Basic Information

Item Value
RNA id CI01000009_10631280_10637275.mRNA
length 806
RNA type mRNA
GC content 0.51
exon number 6
gene id CI01000009_10631280_10637275
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 10631086 ~ 10637275 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCACCCAAGAAGGACGCTAAGAAGCCCGAACCCCCCAAGAAGGCAGAGCCCGCACCTGCCCCCGCTCCCGCAGCCGCACCTGAGGCCCCACCTAAGCCCGCCGCAGTAGATCTGTCCGGTGTGAAGCTCGATTTCAGCCAGGACCAGTTGGAAGATTACAAGGAGGCCTTCGGACTTTTCGACAGAGTTGGTGACAACAAAGTAGCCTACAACCAGATTGCAGATATCATGCGTGCACTGGGACAGAACCCAACCAACAAAGAGGTTTCAAAGATCCTGGGCAACCCCACCGCTGATGACATGGCAAACAAGAGAGTCGACTTTGAGGGTTTCCTGCCCATGCTGCAGTTTGTGGTCAACAGCCCAAACAAGGCAACATATGAAGACTACGTTGAGGGTCTCCGTGTATTCGATAAGGAGGGCAACGGAACAGTAATGGGTGCTGAGCTGCGTATCGTCTTGTCAACACTGGGTGAGAAAATGACTGAAGCTGAGATCGATGCTCTTATGCAAGGCCAGGAGGATGAAAATGGCTGTGTGAACTATGAGGCTAATTTTCTTGGTGATGTTCGTGTCGGGACAAGCCTCTCCATAGCGGAACGACTGTGAGGGGCGGGGTGTGGGTGTGGGGGGGGCTTCATGATTACACAAAAATATAAACCACCCCCTTGACCCCTCACTGTCTGGATCGCAAAGTCAAAGGTGCTAAATATACTGCCATTAATGGACTGGCTGCAAAACCTCCTTCCCCCTTTCCCCAGAGTCTTAATTTATTTTTCGCCTCTGTCAATTCTCATAATAAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K05738 MYL1; myosin light chain 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65348 lncRNA downstream 118439 10512416 ~ 10512647 (-) True G57349
TU65274 lncRNA downstream 188168 10439448 ~ 10442918 (-) True G57283
TU65306 lncRNA downstream 312097 10318719 ~ 10318989 (-) True G57311
TU64969 lncRNA downstream 326618 10303445 ~ 10304468 (-) True G57035
TU65279 lncRNA downstream 332925 10298039 ~ 10298161 (-) True G57287
TU65419 lncRNA upstream 56070 10693345 ~ 10693675 (-) True G57418
TU65427 lncRNA upstream 84428 10721703 ~ 10722089 (-) True G57426
TU65436 lncRNA upstream 99588 10736863 ~ 10737325 (-) True G57435
TU65437 lncRNA upstream 100797 10738072 ~ 10738454 (-) True G57436
TU65440 lncRNA upstream 110239 10747514 ~ 10747781 (-) True G57439
CI01000009_10414678_10421940.mRNA mRNA downstream 209146 10413808 ~ 10421940 (-) True CI01000009_10414678_10421940
CI01000009_10355985_10360375.mRNA mRNA downstream 270711 10355735 ~ 10360375 (-) True CI01000009_10355985_10360375
CI01000009_10330884_10337327.mRNA mRNA downstream 293759 10330780 ~ 10337327 (-) True CI01000009_10330884_10337327
CI01000009_10305247_10317487.mRNA mRNA downstream 313342 10305177 ~ 10317744 (-) True CI01000009_10305247_10317487
CI01000009_10297628_10300270.mRNA mRNA downstream 329984 10297628 ~ 10301102 (-) False CI01000009_10297628_10300270
CI01000009_10762456_10773627.mRNA mRNA upstream 124027 10761302 ~ 10774912 (-) True CI01000009_10762456_10773627
CI01000009_10795119_10827802.mRNA mRNA upstream 157798 10795073 ~ 10827936 (-) True CI01000009_10795119_10827802
CI01000009_10830928_10886836.mRNA mRNA upstream 193653 10830928 ~ 10886836 (-) True CI01000009_10830928_10886836
CI01000009_10925943_10927369.mRNA mRNA upstream 288607 10925882 ~ 10928279 (-) True CI01000009_10925943_10927369
CI01000009_11030714_11032123.mRNA mRNA upstream 393400 11030675 ~ 11035630 (-) True CI01000009_11030714_11032123
TU64878 other downstream 1770523 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 2203074 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 5125838 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 6399617 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 7369129 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 1650942 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 1650942 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 3338113 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 3396289 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 4225122 14862397 ~ 14887464 (-) True G59811

Expression Profile