RNA id: CI01000009_11342784_11347580.mRNA



Basic Information


Item Value
RNA id CI01000009_11342784_11347580.mRNA
length 3017
RNA type mRNA
GC content 0.44
exon number 12
gene id CI01000009_11342784_11347580
representative True

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 11342784 ~ 11348827 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGGACAACTAAGTTCGCGACCAAAGAAAGCGACTTGGGTGGAGCATGTACACGAACAACAACCCTGTGTACTGCTCAAACACACCACCATCACGGCAGAAAACCATCCTCATCAGCTCGATGAGACGCCTGGTGGTGCTGGTGAGATTGATGAAGGGAGAAATGAGGCAGGGAGAGACGAGAAAAAGAAGTCGAAGTCTGGGAGATTCCGCCCTTTTCGCAAAAGAGCTGGAAAATACTACCTGGTTCAGGCTGAGAAGGTGTATCAGAGTGAGGCGGGATCATACCAGAAAATTACTAATGATCACACTCCTCTACAGCACATCACTATTGTAGAGAACCCTGATCATCAAGAAGCTCCCGCCTCTAAAGTCCTCCCTGATGCTGAGAAACAGCTGGAGCAGGACGTCTTCCAACCTCAGGATGTCGACGCTCCACTTAGCTCGGCTGAAGATGAGAGCATGGAAGAGCTGGACAAGGATCAGGTGTCTCTACCACACATCGTGGAGATCCCTGATCCTCAAGAAGCTCCAGCCTCTGAAGTCCTCCTCCCTGATGCTGAGGAACAGCTGGAACAGGACGTCCTCCAACCTCAGGACGTTGACACTCCAGTTTGTTCGACTGAAGATGACAGCATGGAAGAGCTGGACAAGGATCAGACTTCTCCACCACACATTGGAGAGATCAATGATCCTGAAGAAGCTCCAGCCTCTCAAGTCCTCCATGCTGCTGAGGAACAGCTGGAGCAGGACGTCCTTCAACTTCTGGATGTCGACGCTCCAGCTGAAGATGACAGCATGGATGAGCTGGACAATGGCCACATTTGCTGGCGATATGAATTTGGACACAAGCTGGGTCAAGGAGGGTATGGCTATGTGCAAGCAGGGACTCGCTGCAAGGATGGCGTTAAGGTGGCTTTGAAAATTGCAGAAAAGAAGCCAAATACGCGATATATATTAGTGCCTGGCCATCCCAAACGCCTCCCCATGGAGATTGGCCTGACATTAATGGCCAATAAGGGCCCCAGAGTTCCGCAGATAATTAAACTGCTGGACTGGCAGGACGACCCGGACCACTACATCATGGTCCTGGAACGCCCCATCCCCTGCATGCACTTGTTAAGCTTCATAAAGCTTCAAGGAGGAAGTCTCGATGAGAAGACAGCAAGGCACGTTATGCAGCAGGTCATTCACGCTGCTATCATTTGCTGTGAGCGCGGAGTCTTCCATCGAGATATAAAACTGGAGAACGTGCTGATAAACCAGGACACCTTGGAGGTCAAACTGATTGATTTCGGGTGCGGTGAGCTCATGAAGGAGTCTGCCTACGTGACCTTCCGTGGCACAAGAGTGTACTGTCCACCGGAGTGCCATGTCAACGGCGGTTACCATGCAAAGCCGGCGACAGTGTGGTCACTGGGGATCCTCCTGTTTGCCGCGGTGTGTGGGTATTATCCCTCAGACAACAACTTGCGTATGATCAGCGAAGACGAATGGTGCAAACCTGGCCTGTCACAAGAATGCTGCCAGATGATTAGAGCTTCTCTGCAACCTGATCCAGAGCAGAGAATTATTCTGGAAGAGATGCGGCTCCATGACTGGTTTAAGTATAAGCCAAAAGTCCTACAAGACATATATCCAAATATGTCTTCTGAAAAAGCACCTATAGAATCTGATGAATTAATCAGCGTTAGCATCAAGTCAATGCATTACTTCTTGATAGCATTATTTACCCTGATCTTGAAAAACCAGTCTTTATTTCTAACTTAAATGCCTCCAAAACACACACCAATCTCAAAACAACAGGTTCCCACATTTCCTATAATCTGAAAGCACGGCTGGTGGTGTATTTTGACAGACATGCTTAAAATTGAACATAATATGACTGTTAGAGTCACATTTCACACGTTTAGTTCACACTGTACGATTTTGGCCAGGATTGGGCAAAAAGCGAAAGTGTTTGATAGCTAGTTTTACATGTTCACCAATAGCTGATTGCTCAGTCCACCGCTCACCCCTCCCTTCTGAAGCACATAGAGAAGCTACGGTGGCCGACACAGGACAAAGATGTCATCGTCTGAGACAGCAGAGAGTAGCCATTCAAGCAATGAGGTTTCTTTTTACTTTTAACAAAGAATGGTCTCTGCTTCTAATAAACACTAACAAAGAAGAACAACAACATAGTGATGAAACTCTGTAGAGCAGTTTGTCTGTTTAGGGCTGCTGTAGAAACATGCCGGCGCAAAATGGCGACTTAACATGAAAGGAGACTCGTGGTGTATGTAGATAGAAATGGCTCATTCCAAGGTAATAAAAACTTTATACACCACTGAAAACATAGTTATGTATATTATATTGCATTTCTGTCAATAGATCCTCCTAAAATTTACACACTGCACCTTTAAATGGAAAGTTAATCAAAAAATAAAATTCTGTCATCGTTTACTCACCCTCATGTTGTTCCAAACCTGTATGAGTTTCTTTTTTTCTCCTGAACACAAAAAGAAGATATTTTGAAGAATGTTGGTAACCAGACAGTTGACTGTAGCCATTGACATCCATAGTGGGTTTTTTTCCTACTATAGAAATCAGTCGCTATCGTCAACTGTCTAGTTACCAACATTTTTCAAAATATCTTCTTTTGTGTTCAAAAGTAAAAGTTTCTGCACCAATTTAGTTTTTTATGGTCATTTTCCACCATCTCTCTGACTGTTTTTTGCTAAATCTAGATACATGAGTCGACCTCTCTCATCAATTAGTCGGTTGTTGAATGAGTAGTCAATTAGTTGACCATTGTGATCCATGTCTAGCAGCCTAATTAAGAATGATATTATTTTACATGGTGTGGATGATTAAGATCGCGTCCAGTACGAATACTTTATCTTAGTAACCCTCCCAATTATCGGACCCTTTCTGTCTGAGAGTAAATTAATAATATCTAATACAGAATATAATACTACTGACTGCTAATAGCTTTTGCATGAAGCAGTGACTTTTTAATACATACTTTACAAATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU64663 lncRNA upstream 85814 10985244 ~ 11256970 (+) False G56784
TU64662 lncRNA upstream 85814 11159996 ~ 11256970 (+) False G56784
TU64650 lncRNA upstream 85814 11211286 ~ 11256970 (+) False G56784
TU64652 lncRNA upstream 85814 11212925 ~ 11256970 (+) False G56784
TU64660 lncRNA upstream 85814 11222182 ~ 11256970 (+) False G56784
TU65574 lncRNA downstream 21161 11369988 ~ 11370472 (+) True G57556
TU65575 lncRNA downstream 22568 11371395 ~ 11371768 (+) True G57557
TU65582 lncRNA downstream 37527 11386354 ~ 11386583 (+) True G57564
TU65585 lncRNA downstream 48176 11397003 ~ 11397339 (+) True G57567
TU65607 lncRNA downstream 82517 11431344 ~ 11431637 (+) True G57589
CI01000009_10644080_10691030.mRNA mRNA upstream 650734 10644080 ~ 10692050 (+) True CI01000009_10644080_10691030
CI01000009_10583435_10617169.mRNA mRNA upstream 725615 10583435 ~ 10617169 (+) True CI01000009_10583435_10617169
CI01000009_10555555_10560050.mRNA mRNA upstream 782386 10554350 ~ 10560398 (+) True CI01000009_10555555_10560050
CI01000009_10491868_10508777.mRNA mRNA upstream 833775 10491401 ~ 10509009 (+) True CI01000009_10491868_10508777
CI01000009_10477699_10485965.mRNA mRNA upstream 855431 10476658 ~ 10487353 (+) True CI01000009_10477699_10485965
CI01000009_11434018_11455253.mRNA mRNA downstream 84965 11433792 ~ 11455635 (+) True CI01000009_11434018_11455253
CI01000009_11493236_11526914.mRNA mRNA downstream 144409 11493236 ~ 11526914 (+) True CI01000009_11493236_11526914
CI01000009_11669960_11702667.mRNA mRNA downstream 321133 11669960 ~ 11703539 (+) True CI01000009_11669960_11702667
CI01000009_11711277_11714191.mRNA mRNA downstream 362333 11711160 ~ 11714694 (+) True CI01000009_11711277_11714191
CI01000009_11761868_11765848.mRNA mRNA downstream 412779 11761606 ~ 11766331 (+) False CI01000009_11761868_11765848
TU64139 other upstream 1486197 9853359 ~ 9853515 (+) True G56323
TU63847 other upstream 2212498 9129300 ~ 9130286 (+) True G56100
TU61103 other upstream 5094392 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 5409983 5860302 ~ 5860756 (+) True G53655
TU60791 other upstream 5803730 5535245 ~ 5538095 (+) False G53388
TU65813 other downstream 411959 11760786 ~ 11760858 (+) True G57782
TU65844 other downstream 585115 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 585115 11933942 ~ 11935251 (+) False G57811
TU65846 other downstream 585115 11933942 ~ 11935251 (+) True G57811
TU65746 other downstream 1083731 12432558 ~ 12433084 (+) False CI01000009_12432736_12435509

Expression Profile