RNA id: CI01000009_11707091_11707360.mRNA


Basic Information

Item Value
RNA id CI01000009_11707091_11707360.mRNA
length 2578
RNA type mRNA
GC content 0.39
exon number 1
gene id CI01000009_11707091_11707360
representative False

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 11702572 ~ 11707589 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTTAAAAAATGCGTCTTCTTCACACAGGGCAAGTGTGAGAATGCTATACATCATGGCTGACCATCTGGAGTGTCTCAACTACACTTTGTACAGAAATACCTACATTCTAGCTTCTTACCCATACAAAACCCTATAAACTGTCAACCAAGGGAATAAAACCTCTGTATCAGGCCATCTTTGCATCTCTTCGCCTCACTGCTTTCAAACCAATGCTACATTATTTATATCATGGGATGCATGAAATCCAAGCACCGCGACCCTACTCAGAATGCCAGCTCATCGGAGAAAGTGGATGGCAAGTCAGGAAAGCAAGGAGATAAAGCCGTTCTAGTTTTCTCAGAGATCGGCTCCATGGAGGACTCAGTGCAGGTCAATCCAGTACTGCTGGACTATGCCCAAAGACTCTCAGAGGAAATTGTGGCCCGGGCAGTACAACAATGGGCAGAGGTGGACAGCCGGTACAGTGACATCCCCTACATTGAGTGTGACGTGCCATAAGTTTTTAACTGTGTGGAATAAGATTGGATTGGTCTGGCTCACTCCTCTCCTGTATGTACTGTAAAAGAGAGCTTTCAGATCAACAAATGAAGGCCAGTGGAGAATCATGTCATTTCGGGAAGAGGTTTTCTTAAGAAATGGCCATGGAGCTGTTATAATACAAGACTGCATCTTTTTATGTCTCTTGTTTACCCTCAAAGCCCAGTTGTTTAATTGGAGAGTCCCTGAAATTGTCCAAAGGCCACAATCTTTCCAACCATGTTAATTATAGACTTCATCTTTTTGCCTTTAGTATTTCATGTTTATGTGGCTCAGCACATCAGACAGTACCTCATTTCTATTTTCCATCCATCCATCCATCGGTCTTAAGGTGTGGTCACATTGGCTTTCTGTGAAAAAGGTTCATTGTCTGTTACCACTTCAATCCAAGTCACTTTCAAACCAAGCAGCTTTCTGTTGGTCAACGTAGTGAATCTGAGTGACCAACTGTACCTGTAGCGAAATCTACATGGGCAAACCTTTCGCCCTCAGATTAAATTCTCAATCACCTATTTAAATGACTGGATTTTCGCCATGGATTTTGCTGAACAACAGTAAATGTTACCACACATTTACAGAGCATCCGCTCAGGGGTCACGGTTTCTCTTTAAGGGGCCAGTGCTGGCTTTTAGGGATCAATAGGTGTACATTACTTCACCGGTAACCTTTTTTTGACATGACAGCTGTGTCAACTGTAATTCCTGGTACAAAATCAACGACCTTGTGGTCACTATGGCCAGACATTGTTTATCAATGACACATTCTTAGATTTAGAGCTGTTTAAAGATCATCCTGTATCCTCATGATGATGGCATGAGAGAATACATTCGAGCAGAAGGATTATATCCATCCATCCCAAAATTTGTGTATCAAGCCATTATATAATTTTGTTAATTTAAGTTTTTTTCTGTGCAGATCAAATATGCAATTCTTAAAGGCTAAGAAGATTTAAAAAGAAACTGAAAATTACATATTGCTACCAAGACTGCCAAACCCCTCACTAAGAGAAAGAAAAAATTCAGACTGGGGACCAAACACGCCAATGTCCTTAATGATCGTTAATACAAGCACAATTACTCTTCTGGTAGTGTTTTAACAGCTGCTCACCAATGCTTTTTATTGATGGATATATTGGCACTTCTGGATCTTGTGCCATGCTGTCAGGTAGCCAGAATCCCTTTAATGATTTCCAGATCAATAGAGTGCAACAGTTGGGTTCTGGAAGTAAAAATCACATTATTTTTCTCCATAGAGATCGATTTTTAATGATAAATGTATAAAGCTTTTAAAATCTACCTGAGCTCTGAGGTGGTTAACTGATGATATATGCTTCTTCACAAGTCAGTGTGTTTTCAACTACATAAAAAAAAACTTAAATTCAGAGGGAAGGATCTACTTATAATCATAAGGTTACCATGAAAATCTGTTCTGAAGGAACTCGCCAGTGACCACCCTCTCCCATAAAGCATTTTGAATCCTGTAATCAAATAAATATCACAAAAAACTTATATTTTTGTATATGTCAGAAAATGTTGTGATTAACCTAAAATTTTAGGTTCACAGTTTTGTACCTTTGTCTTGTTTTTCAGATTACTTTTTTTTTTTTTGCTTCAAATAAAAGGTTGTTGGAGCTGGCTGTTTGGTTCATGGCTTTAAACTCTTTACTGAGGACCATTTTCAAATCCCTATGGAGAAAATGAACGAGAAAATTACTTCCAGAACCGAGGCCACTGAAAAAGTGGGTAGTCACTGTTACGGCCTGTTGCAAGGAGCAAGGACTGCACTTTGACCATTATACTTTTGCATAGAAAGTCATAAATGCAGAGTGAAATCATAAGATATAAAAGAAGGACTTAAAGTTGTATTTTACGAGGCCTTTCAGCACATTACTTAATGTGCTCAGAGTAGAACTTCAGTATATCTCAGTATCTCAAAGAACAATCAGTACATGATTCATGGTGTTCATTACTCTCCTTATCTTCCTTAATTATAATAGGCCAATAGAACTAGGTCATATTTGGTTTAGGATGAACTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67094 lncRNA downstream 184394 11520311 ~ 11520618 (-) True G58931
TU67093 lncRNA downstream 187117 11517437 ~ 11517895 (-) True G58930
TU67090 lncRNA downstream 189174 11515512 ~ 11515838 (-) True G58927
TU67089 lncRNA downstream 189931 11514766 ~ 11515081 (-) True G58926
TU67088 lncRNA downstream 190877 11513631 ~ 11514135 (-) True G58925
TU67146 lncRNA upstream 91511 11799100 ~ 11799359 (-) True CI01000009_11792162_11799153
TU67043 lncRNA upstream 95949 11803538 ~ 11810843 (-) False G58885
TU67044 lncRNA upstream 95949 11803538 ~ 11810843 (-) True G58885
TU67159 lncRNA upstream 228748 11936337 ~ 11936637 (-) True G58996
TU67176 lncRNA upstream 285472 11993061 ~ 11993339 (-) True G59011
CI01000009_11660386_11668299.mRNA mRNA downstream 36713 11659650 ~ 11668299 (-) True CI01000009_11660386_11668299
CI01000009_11573561_11616345.mRNA mRNA downstream 88667 11573448 ~ 11616345 (-) True CI01000009_11573561_11616345
CI01000009_11538058_11566095.mRNA mRNA downstream 138917 11538058 ~ 11566095 (-) True CI01000009_11538058_11566095
CI01000009_11491188_11491908.mRNA mRNA downstream 213011 11490935 ~ 11492001 (-) True CI01000009_11491188_11491908
CI01000009_11255397_11267304.mRNA mRNA downstream 437708 11255397 ~ 11267304 (-) True CI01000009_11255397_11267304
CI01000009_11715928_11716422.mRNA mRNA upstream 7659 11715248 ~ 11716422 (-) True CI01000009_11715928_11716422
CI01000009_11728865_11759677.mRNA mRNA upstream 21170 11728759 ~ 11759677 (-) True CI01000009_11728865_11759677
CI01000009_11767607_11768611.mRNA mRNA upstream 59897 11767486 ~ 11768611 (-) True CI01000009_11767607_11768611
CI01000009_11774462_11788963.mRNA mRNA upstream 66730 11774319 ~ 11788963 (-) True CI01000009_11774462_11788963
CI01000009_11792162_11799153.mRNA mRNA upstream 84561 11792150 ~ 11799153 (-) False CI01000009_11792162_11799153
TU64878 other downstream 2844449 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 3277000 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 6199764 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 7473543 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 8443055 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 580628 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 580628 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 2267799 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 2325975 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 3154808 14862397 ~ 14887464 (-) True G59811

Expression Profile