RNA id: CI01000009_11885290_11889329.mRNA



Basic Information


Item Value
RNA id CI01000009_11885290_11889329.mRNA
length 1218
RNA type mRNA
GC content 0.29
exon number 5
gene id CI01000009_11885290_11889329
representative True

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 11884974 ~ 11889856 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAATTCCATGTTTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTCCCTCAGGCCTGAAAAGTCATGGAAAATAAATTCTTAATTAATTATTTACATTTTTATAAAGTATAATTTATAAATATACAATTATGTATTATTTATATATAATTAAGTATAATTCTAACATTTTATTTTTTATTAAATATAATTATACAATTTTATTACATTTTATACAAAATATTTTATAAGAAGATGATCTTTTTGTGAGCCATTTTTGAAATCTTTATCCAGGAATGGTGCACGACTGGGAAAACTCATGTAAATTCATCACTCTGAAGGTGAAATCTGTCATCAACCTCCTCTTTGCTGCCTATACAGGAGATGTGTCTGCTCTGAGAAGGTTTGCACTGTCCTCCATGGACATGGAGCAGCGGGACTATGACTCCAGGACGGCGCTGCACGTTGCAGCCGCTGAGGAGGCCTGCAAGGTGAATCCTGGTCCCAAGGACAGGTGGGGCAACACACCAATTGATGAGGCGACACATTTTGGTCATCATGAGGTGCTCGAGCTTCTACAGGAGTACAGCAGTAAGTACAACCCAGCGGTGAATCCTGTCGCAGATAAAGAGACCACCGAAAAAAACCTGGATGGGATGCTGGAGACGTAATCATTTCGACCACTAGAGGACAATCTTCTGGAGCAGCCCAATGAAGGACTGGTTCTTTACAATACCATTGTGCTGTTTTGGTCAAAACTTGTGTACATTTTTTTTTTTCTTTTAACGTTGTCTCCTGTAGTTTTTGTATGCTTTTGTGAGATATTTTGGCTCGTTCTCAACTTCCTTCTCGCAAGAAAGGGTGTGAGTAATGATAATGTCCATAATCAGTGTTGTGAAACGACTCTCAATAGGCACTATAATTGTATCTCTTAAATTCTTTAGTTCAAGTGAAAAGGTGACTGAATTGTGGGTGTGAATGAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU67043 lncRNA downstream 74131 11803538 ~ 11810843 (-) False G58885
TU67044 lncRNA downstream 74131 11803538 ~ 11810843 (-) True G58885
TU67146 lncRNA downstream 85615 11799100 ~ 11799359 (-) True CI01000009_11792162_11799153
TU67055 lncRNA downstream 175799 11708987 ~ 11709175 (-) True G58893
TU67094 lncRNA downstream 364356 11520311 ~ 11520618 (-) True G58931
TU67159 lncRNA upstream 46481 11936337 ~ 11936637 (-) True G58996
TU67176 lncRNA upstream 103205 11993061 ~ 11993339 (-) True G59011
TU67181 lncRNA upstream 161122 12050978 ~ 12073540 (-) False G59014
TU67183 lncRNA upstream 161122 12050978 ~ 12059553 (-) True G59014
TU67233 lncRNA upstream 214904 12104760 ~ 12104978 (-) True G59054
CI01000009_11812069_11833136.mRNA mRNA downstream 51838 11811892 ~ 11833136 (-) True CI01000009_11812069_11833136
CI01000009_11792162_11799153.mRNA mRNA downstream 85821 11792150 ~ 11799153 (-) False CI01000009_11792162_11799153
CI01000009_11774462_11788963.mRNA mRNA downstream 96011 11774319 ~ 11788963 (-) True CI01000009_11774462_11788963
CI01000009_11767607_11768611.mRNA mRNA downstream 116363 11767486 ~ 11768611 (-) True CI01000009_11767607_11768611
CI01000009_11728865_11759677.mRNA mRNA downstream 125297 11728759 ~ 11759677 (-) True CI01000009_11728865_11759677
CI01000009_11892743_11932618.mRNA mRNA upstream 2833 11892689 ~ 11932618 (-) True CI01000009_11892743_11932618
CI01000009_11947288_11963040.mRNA mRNA upstream 56601 11946457 ~ 11963040 (-) True CI01000009_11947288_11963040
CI01000009_12007202_12021667.mRNA mRNA upstream 116912 12006768 ~ 12022037 (-) True CI01000009_12007202_12021667
CI01000009_12152712_12167719.mRNA mRNA upstream 262609 12152465 ~ 12167719 (-) True CI01000009_12152712_12167719
CI01000009_12167744_12175422.mRNA mRNA upstream 277888 12167744 ~ 12175422 (-) True CI01000009_12167744_12175422
TU64878 other downstream 3024411 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 3456962 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 6379726 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 7653505 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 8623017 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 398361 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 398361 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 2085532 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 2143708 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 2972541 14862397 ~ 14887464 (-) True G59811

Expression Profile