RNA id: CI01000009_11892226_11892558.mRNA


Basic Information

Item Value
RNA id CI01000009_11892226_11892558.mRNA
length 377
RNA type mRNA
GC content 0.41
exon number 2
gene id CI01000009_11892226_11892558
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 11892226 ~ 11892677 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCAAACGACATGAGGGTACACAAATCACCCTTACCGGCCACTGTACAGTACTTTCTGCAAAAAGTTTCAGAGAACATTCATGTGCTTGTGACACCATCAAGTTAAAGGCCTCACTGACAGACTCTATGTGTGCAGCCAATTCTAAACTTCCACCAAAACACACTTGCTGGTCTATGAGAGAATACAGAGCCTATAAATCACACTGCACCAAACGTCCACCAAGCTGCTTTGCTTTAGGCGTTAGCACAGATAGATAAAACAGAAGCCAAGGCATAAGACTGTATCCTCAATCATAGTCATTCATATTCACAACGAAAGATACAGTGACTCTGGTGATGAATCATTCACATGTGACCAGAATGATATTCATTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65825 lncRNA upstream 57266 11834738 ~ 11834960 (+) True G57792
TU65750 lncRNA upstream 69695 11815069 ~ 11822531 (+) True G57719
TU65823 lncRNA upstream 104442 11787576 ~ 11787784 (+) True G57790
TU65822 lncRNA upstream 104900 11786904 ~ 11787326 (+) True G57789
TU65819 lncRNA upstream 111659 11780329 ~ 11780567 (+) True G57787
TU65848 lncRNA downstream 45701 11938378 ~ 11938639 (+) True G57813
TU65755 lncRNA downstream 274854 12167531 ~ 12168221 (+) True G57724
TU65768 lncRNA downstream 278686 12171363 ~ 12172140 (+) True G57737
TU65888 lncRNA downstream 295868 12188545 ~ 12188820 (+) True G57850
TU65893 lncRNA downstream 304728 12197405 ~ 12197625 (+) True CI01000009_12198114_12221988
CI01000009_11875722_11882183.mRNA mRNA upstream 9305 11875486 ~ 11882921 (+) True CI01000009_11875722_11882183
CI01000009_11835682_11873220.mRNA mRNA upstream 18896 11835682 ~ 11873330 (+) True CI01000009_11835682_11873220
CI01000009_11803818_11808988.mRNA mRNA upstream 82991 11802384 ~ 11809235 (+) True CI01000009_11803818_11808988
CI01000009_11789703_11791511.mRNA mRNA upstream 100490 11789703 ~ 11791736 (+) True CI01000009_11789703_11791511
CI01000009_11769442_11773619.mRNA mRNA upstream 118607 11769442 ~ 11773619 (+) True CI01000009_11769442_11773619
CI01000009_11993879_12004644.mRNA mRNA downstream 100967 11993644 ~ 12004765 (+) True CI01000009_11993879_12004644
CI01000009_12022660_12022944.mRNA mRNA downstream 129883 12022560 ~ 12023388 (+) True CI01000009_12022660_12022944
CI01000009_12028975_12032758.mRNA mRNA downstream 135818 12028495 ~ 12033037 (+) True CI01000009_12028975_12032758
CI01000009_12050866_12109305.mRNA mRNA downstream 158096 12050773 ~ 12110098 (+) True CI01000009_12050866_12109305
CI01000009_12130688_12146560.mRNA mRNA downstream 238011 12130688 ~ 12146942 (+) True CI01000009_12130688_12146560
TU65813 other upstream 125282 11760786 ~ 11760858 (+) True G57782
TU64139 other upstream 2035639 9853359 ~ 9853515 (+) True G56323
TU63847 other upstream 2761940 9129300 ~ 9130286 (+) True G56100
TU61103 other upstream 5643834 6245564 ~ 6248392 (+) True G53651
TU61110 other upstream 5959425 5860302 ~ 5860756 (+) True G53655
TU65844 other downstream 41265 11933942 ~ 11935251 (+) False G57811
TU65845 other downstream 41265 11933942 ~ 11935251 (+) False G57811
TU65846 other downstream 41265 11933942 ~ 11935251 (+) True G57811
TU65746 other downstream 539881 12432558 ~ 12433084 (+) False CI01000009_12432736_12435509
TU65740 other downstream 541987 12434664 ~ 12436017 (+) True CI01000009_12432736_12435509

Expression Profile