RNA id: CI01000009_12167744_12175422.mRNA



Basic Information


Item Value
RNA id CI01000009_12167744_12175422.mRNA
length 3699
RNA type mRNA
GC content 0.44
exon number 13
gene id CI01000009_12167744_12175422
representative True

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 12167744 ~ 12175422 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGCCAGAGCTACAACCACAGTTAGAACCAATGCTACAACCAATTCTACAACCACAGTTACAAGGAATGCCAGAGCTACAACCACGGTTAGAACCAATGCTACAACCAATTCTACAACCACAGTTACAAGGGATGCCAGAGCTACAACCACAGTTAGAACCAATGCTACAACCACAGTTACAAGGAATGCCAGAGCTACAACCACAGTTAGAACCAATGCTACAACCACAGTTACAAGGGATGCCAGAGCTACAACCACAGTTAGAACCAATGCTACAACCACAGTTACAAGGAATACCAGAGCTACAACCACAGTTAGAACCAATGCTACAACCAATTCTACAACCACAGTTACAAGGGATGCCAGAGCTACAACCAAAGTTAGAACCAATTCTACAACCACAGTTACAAGGAATACCAGAGCTACAACTACAGTTAGAACCAATGCTACAACCAGTTCTACAACCACAGTTACAACCAATGCTACAACCACAGATACAACCTGTGCTACAACCACAACTGCAACCTCAGCTACAACAGCTGCAACCAATGAATCAAACAAGAACTTCAATTTCCGAAGATGAAGGCTCAAATCACATCACAATACAAGAGAGTGACATGGATCAAGATGTCTTAGCTTTTAAGGTGGATGTTGAAGCTTCGAGGACAAATTCCACACCACTTTGTGGAATGGATGAGAGCTTGCCCATTGATGCAGACTGTTCCAGTGTACTACTAATTGAGAGCTCTGACCACACAACTCAAGAAAAACCTATATCCTGCCAACAAGATGAAGCAACTGTGATAGTTAATAAACCTACAATACAGAAAGAGCTCATCCAATCATCAAATATGTGTCTGCAAGAAGCATATGAGACTGTTACCAAGGACGAATTTGTTTATCAAGAGGAACTGAAAGAACCTATTCACAATGAAGAATTATTTATACAACCACTTGAAACTGAAGTTGTCAGACCCATTGAAGGCGATTCTCCAGTTCATTGGTACGAGGACGGAATGCAATTTTACTCGGAAAATGGACATATTCTTGAAATGGAGGAAGAAGTACAAAGGCCGAATGCTCCAGCCATTGACTCGGGTCAATCAAAGGATGATGACATAATATTTAAGGTGGATGTCAAAGCTACATCTTTGCAAACTTCAACTATCCATGAGACTGAAGGGAGCGAGTCAAATGATGAAACAGGCATTGCTAATTTTCCACAACCTGAGGTATCAAGCACAATGGCAGAGGTGTGCCAGTACAAGGAAGGCGAGGACCTCCAACAATGTGATGTTATCACCCAATCTGAAGAGACTTTCAGAGCTCTTGTTGCCAAAACAGCTGAGCCGTCTCACTCTGGGGAACATGCTTGTGAGACAGATGATGTCACCGTCCAGTTTGCAGTGGACCTACCAGCTCCTCCAGTGACGTTTTCCAGTGTCCCTGAGGCTCAACGGACCAAATGCATTGAGTCAGGAAGACCCTTTAAACTGCAATGCGAAGTCTCAGACCCTGATGCGCAAGTCTGCTGGTACAAAGATGGGAATGAGGTGCTTCCTCAAGATGGTTTTGTCACTGTGAATGAGAAAGCAATGAGAACACTCTCTGTGCAAACTGCCAAATTACGTCACAGTGGAACATACAGCTGCCAGACAAACAATGATACCATCACATTCCATGTGGAAATCAAAGCTCCATCACTGAAGTTCATTCCAATTTCAGAAGTGGAGAAGAACAAGTCCACCGAAGTAGACTCACCAATTGTTCTGAAATGTGAGCTATCAGACGCTACCGCTCAGGTGCTCTGGTGTAAAGATGGTAGAGAGCTGGCCCCAAACCCTGGGCTCAATTTCCAAACAGATGGAAATATGAGGAAACTAACCGTTCAATCAGCCAAACTGTCTGATACTGGAAACTACACCTGTCATGTTCCAGCTCACCCTGTTAGGTTCTCAGCACTCCCAGAAATTGCAAGGAACAAGTTTATTGAAGCAGGCTGTCCCATTATACTTCAGTGTGAAATCTCAGACCCTACTGCCCAAGTTTCCTGGCTCAAAGATGGAGTCGAACTCCAACAAGACAGTGGACTTGACATCCAATCAGAGGGCACTATGAAGACAATGATCATCCATTCCGCTGAGCTCAAACACTCAGGCGTGTACAGCTGTGAGGCTGTGGATGATCGCATAGCATTCAAGGTGGATGTTGCAGCTCCACCAGTGACGTTCTCAGCTGTTCCTGAGATTGAGAAGAACAAGTCAGTTGAAGCAGGCTGGCCAATCATTCTCCAATGTGAGATATCTGATCCTACAGCCCTGGTCCAATGGTATAAGGATGGATTACAGCTCCTACCTCAATCTGGGGTTTACATCAAATCTCAGCACACCATGAGGACATTGGTTATCCAATCAGCAAATGTATCCCACTCTGGGTTTTACAGTTGTAATACTGCTGATGATATCAGCGAATTTTTTGTGGATGTTAAAGCACCTCCTGTGACATTTGCCTATATACCAGAAGATGATCTGCACAGAAATATTGTGGAACAAGACAATCTACTCCTTTGCTGTCAAGTGTCCAGGTCAGATGCTACAGCACAATGGTACAAGGATGGAGTAGAGTTAAAGTCTAGTGACAATGTCCTCATAGAGGCAGAAAACACTTTACGAAGGCTGATCATCCTGTCAGCTCAGCTGTCAGATTCTGGAACATATACCTGTCGTGCTGGAGATAGTGCCTTAATATTTAAAGTTAACGTAAGAGAACCTCCAGTGATGATTGTATATCCCAAGGAAGATGTCCACCTTGATCGCTATGTTCCTGAAGAAATTGTCCTCAGCTGTGAACTTTCACGACCAAATGGAAAGGTGACATGGTTCAAGGATGGACAGAAACTACAAGAGAGCGAAAACATAAAGCTAAAGACAGAGGGTCCATATAGACGGCTAAAAATTCTGCGCAGTGGTGTTGAGGACTCTGGAGAATATGTCTGTGACACAGCTGATGATTCAATATTCTTTAATCTAAACATAAAAGAACCACCGGTGCGGATAGTTTCTCCAAGCCAGTCCCAAATGGAACTTTGTCAACAGACTTCTGAGAGGATGGTCTTGAGCTGTGAAATCTCTAGACCCAATGCCAACGTACGTTGGTATCGAGATGGTCTTGAAGTGGAGGAGAGTGACAGCCTAATTCTGGAGGTTGATGGTGTCTATAGGAGGCTTATTATCCCAAAACCTACCGTCAAAGACTCTGCAGAATATGTCTGTGACACTGCTGAGGACTCAGTAACCTTCTTTGTAAATATTGCAGAGCCACCAGTTAGGTTTATTCGGCCAAGGAAAACAACCTATGCAGTAGAGAAACTTGTTGGAGACATTGTGGTCCTTGAGTGTGAAGTGTCTCGACCAAATGCTGAAGTTAGCTGGAAGAAGGATGGAGAAGAGATTGAGGAGAACATCAACATTACTATCACAGAGGATGGCACAAGTCGACAGTTAACCATTCACTCCGCAGCTTTGGATGATGCAGGGCAATATGTCTGTGATGCCAGAGATGATGTAATGGACTTCCTAGTGAAAATCAAAGATCCACCACTGAAAATTCTGCGGAAAGCTGACATAGAAACGAAACGCCAGTTTGTAGTATCTGATGCGATTGTCTTAAAATGTGAGATCTCAAGAGCAAATGGGGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU67204 lncRNA downstream 19204 12142828 ~ 12148540 (-) True G59035
TU67251 lncRNA downstream 43050 12122840 ~ 12124694 (-) True G59071
TU67240 lncRNA downstream 54896 12112590 ~ 12112848 (-) True G59060
TU67239 lncRNA downstream 55962 12110735 ~ 12111782 (-) True G59059
TU67238 lncRNA downstream 57226 12109062 ~ 12110518 (-) True G59058
TU67269 lncRNA upstream 13120 12188542 ~ 12188859 (-) True G59088
TU67271 lncRNA upstream 21727 12197149 ~ 12197440 (-) True G59090
TU67275 lncRNA upstream 24608 12200030 ~ 12200392 (-) True G59094
TU67289 lncRNA upstream 26504 12201926 ~ 12242338 (-) True G59099
TU67284 lncRNA upstream 73885 12249307 ~ 12263165 (-) True G59096
CI01000009_12152712_12167719.mRNA mRNA downstream 25 12152465 ~ 12167719 (-) True CI01000009_12152712_12167719
CI01000009_12007202_12021667.mRNA mRNA downstream 145707 12006768 ~ 12022037 (-) True CI01000009_12007202_12021667
CI01000009_11947288_11963040.mRNA mRNA downstream 204704 11946457 ~ 11963040 (-) True CI01000009_11947288_11963040
CI01000009_11892743_11932618.mRNA mRNA downstream 235126 11892689 ~ 11932618 (-) True CI01000009_11892743_11932618
CI01000009_11885290_11889329.mRNA mRNA downstream 277888 11884974 ~ 11889856 (-) True CI01000009_11885290_11889329
CI01000009_12176488_12184112.mRNA mRNA upstream 732 12176154 ~ 12185660 (-) True CI01000009_12176488_12184112
CI01000009_12304891_12322499.mRNA mRNA upstream 129267 12304689 ~ 12322924 (-) True CI01000009_12304891_12322499
CI01000009_12486758_12498650.mRNA mRNA upstream 310204 12485626 ~ 12498650 (-) True CI01000009_12486758_12498650
CI01000009_12531562_12540003.mRNA mRNA upstream 355703 12531125 ~ 12540373 (-) True CI01000009_12531562_12540003
CI01000009_12643324_12643737.mRNA mRNA upstream 467839 12643261 ~ 12643988 (-) True CI01000009_12643324_12643737
TU64878 other downstream 3307181 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 3739732 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 6662496 5502395 ~ 5505248 (-) False G53515
TU60172 other downstream 7936275 4217420 ~ 4231469 (-) True G52828
TU59814 other downstream 8905787 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU67286 other upstream 112795 12288217 ~ 12289518 (-) False G59097
TU67287 other upstream 112795 12288217 ~ 12288977 (-) True G59097
TU67750 other upstream 1799966 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 1858142 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 2686975 14862397 ~ 14887464 (-) True G59811

Expression Profile