RNA id: TU67652


Basic Information

Item Value
RNA id TU67652
length 973
lncRNA type sense_over
GC content 0.36
exon number 1
gene id G59415
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 13582035 ~ 13583007 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGGAGTGTGATTCAAAAACAATGCCTATCATCTCCTCCGAAGGAACATACCCCTGGAACATTGACGGAGATCTCTTGGAGGTCCCATCTGAGCTCCTGATCAGAGTTCATCCGCAGCTCCTCACACTCTTTGGAGAAGACGTGGAGGAGGCGGAGGAGTCGCCAGTTAAATGCAGCTGTATCTGAACAAACAACCACACACACACACACACACACACACACACACACACAAGAGAGATTGTGCTAGATAGCGCTAAGAGAAATTGAACAAACAAATTGCACAAAGCAAAGCTTTAACATGTATATATAGAACATTTTATGTCAGAGCAAAGCATTTGACACATAATACATTCCAGTGCATAAAGAATTTAAATTAAACCAAAGTAAAATTTTCAACAATTTTTTAAAGACAGGAAAAAAAAAAATCTTACATTAACTTATTAAAAATACTGATATAAAAAAGCAATGTGCTTTTTTTGTATGCTATTCCCTGAACAGTAGAGGTTTTTTTGCATCTTTTTTTTTTTTTTTTGCATCTTGCATCTTTTATATTATAAAAATCACTGACAAGCAATCCATCTGATGTGGTTTCCCAAATCTAAAGATTATATTACACATTTTTAGCTTTGATTCTCACAGGACTGTTTGTTCTTACTATCCTTTCAGGTCTCGTTCATACACCAACACACGCTTACGAGCATCACAGACAAAATCAGCTGACTTTTCCACATTTTCTGCATGGATTTTGGGCAAAATTGAAAAAAAAAAAAAAGATTTTTTTTTTTTTTTTTTTGTATCTTTAAAAAACATTTTATTCATACAATTTCAGTAAGTTTTCATTTTTGTTCCTCATAACATAGCACCAAAATTCATTCAGCATATGATATTACATATTTGGCATGATAATCAGGTTTTGTAAATAAATTAAATTTGACAATTTAACTTGGATTGAAAATACAAAACCTAATTTTCTTTGTAATTTTAATTTTTGTTATATTTCAGTGCACATTTATAGCTTTAGCTTAGTTTTCATTGTTCTGCATACTCCAATTTTTTATATAATTACTGAGTTAATTCTGTTATTTATTTTCATTAATACCCTTAGCTAAAATATTTCCTAATTTAAGAGACAAAGGGCAGGGGATGAGCAGATCTTTGAATGACGGGCACGTGCAGATTCCTTGCAGGTCTGCGTGTGAGTGAGAGGTGATGGTGTGTGTATATGTGCCATATAAAATGAATACACACACTCTTAAGCAATGGCTGGAAGCCAGACACATGCCAATCTCGTCACTCTTCTGTAGCACAGTACAGACACACAACAGCAGCCTCCTTTGCTCCGTTTCCATGGCATCCAGCCAGGGCACGCAGCAAACACTCGCTCCTTCCATCTGGCGTCTCCGTTCAAACTTCTAACTATTGAACTCAGCAGCGAGAGTTTGGGAGGAGAGAGAATGTGTATCGTTTCCTCCTTTTTTTCAAGAACCGATACTGCAGTGATGCAAAGGTGTGAAAACCCCTATCACAGCAATGTTCTCCTTCAGGAGGAGTGATGGAAAGTGCCTGTGTCACCTCTGTGGAGGGTATACTAACTTGCGGGTGTAAAAAAGCAAGCCTTTCTTCGCATATACACAGGCATAACCTTAGCAAGAAAAGCTACAGCAGTGCAATTTCTCCTTTACAGCAGGCCAATAGCCAATATGTTCAGTGATCGTAGGCAAACCTGTGATGAAACAATTAGGCTCTGTTCCAAAACCTAGCGAGCTGCCTTGCCATCGATACAGCCTACGTAGGCAGCTGTTTTTTAAGACAGCATCAAAACTTAATTATAACCTCATAAATAACCAATGACCACCACAGTTAAGACTCGGCTCACAATTGATTTCAATTGGATTTTAATGAGAGCAGGCTGCTGTCAGATTGATTGATCGAGATTAATCACATCTAACATAAAAGTTTGTAAATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTATATATATATATACACACACACACACTTATGTTAGATGCGATTAATCGTGATTAATCGATTTGACGGCAACCTGCTAATCGTGATTAATCGATTTGACAGTACTAATAAAAATACATAACATACACTACTGATCAAAAGTTTTGGAGTCAAAATTGATCAAAAATGACATATATAATGTTACAAAAGACTTCTATTTTAAATAAATGCTGTTCTTTTCCCAAAGAATATTAAGCAACTGTTTTCAACACTGATAATAATAATAATAATAAAAAAATCTTGAGCAGCAAATCAGCATATTAGAATGATTTCTGAAGGATCATGTGACAATGAAGACTGGAGTTATGATGCTGAAAATTCAGCTTTGCATCACAGAAATAAAATACATTTGATAAATTCTCATTTTAAATTGTAATAATATTTCACAATATTACTGTTGTTTGATGCAGCATTGGGAGACTTCTTTCAAAAGCCTTAAAAAATCTAAACCTCAAACTTTTGAAAGGTAGTGTACATATATTAATAGATATTTTAATTTGACTTTTCAGTGTGGAAAAAATTATATTCATAATTAACATTCTCTCACTTTTAACTCTGCTTGTCGCAATGCATTTGTCATACTACCTTAGAATTTGGCCTCATGAAGGTATCTTTATGCATCCTACCTTTTGGAACAGCCTACATAGGTTGCTCACTAGGTTTTGGAACAGAGCCGTAATGTTCTATAGCGACAGTACATTCTGAAGTGAATTCTTTTTTCCCTTGGCACGGCAGCCCCGGAGTGATTCACTCTAAAGTGCATTGGCTTCATCCTGCTGACAGAAAATGCAGATTCTTTTGAAAGTCTTCATCGCTTTGTGATGAATGTTTTCAGCCATTACGGTTAACGGCTATCATGAGTCCAGCTCTTGGTGTCAGAGCAGTAGTCCTTCATGGTTTGTCCCTTCCATTGATTGGTTTTGTATGTGATGTAAATCCCATATTATGTCGTGCTCTCTTTCTTTGGTACATAGTCCCAACTGTCCCGTCTAAACTTCTCCTCCTTCAACTTTCGCTTGAAGAATCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67588 lncRNA downstream 254651 13326545 ~ 13327384 (-) True G59363
TU67516 lncRNA downstream 310589 13270845 ~ 13271446 (-) True G59292
TU67498 lncRNA downstream 356673 13207082 ~ 13225362 (-) True G59274
TU67499 lncRNA downstream 375431 13198502 ~ 13206604 (-) True G59275
TU67504 lncRNA downstream 397547 13162876 ~ 13184488 (-) True G59280
TU67698 lncRNA upstream 92700 13680978 ~ 13681722 (-) False G59457
TU67696 lncRNA upstream 92952 13681230 ~ 13681722 (-) True G59457
TU67731 lncRNA upstream 112314 13700592 ~ 13787413 (-) True G59473
TU67730 lncRNA upstream 211720 13799998 ~ 13819996 (-) True G59472
TU67727 lncRNA upstream 238208 13826486 ~ 13864603 (-) True G59470
CI01000009_13350460_13383813.mRNA mRNA downstream 197366 13350157 ~ 13384669 (-) True CI01000009_13350460_13383813
CI01000009_13273365_13305127.mRNA mRNA downstream 276908 13273365 ~ 13305127 (-) True CI01000009_13273365_13305127
CI01000009_13233918_13237052.mRNA mRNA downstream 344983 13233350 ~ 13237052 (-) True CI01000009_13233918_13237052
CI01000009_13161845_13162324.mRNA mRNA downstream 419711 13161766 ~ 13162324 (-) True CI01000009_13161845_13162324
CI01000009_13124087_13152851.mRNA mRNA downstream 428813 13123994 ~ 13153222 (-) False CI01000009_13124087_13152851
CI01000009_13667246_13668040.mRNA mRNA upstream 78175 13666453 ~ 13668597 (-) True CI01000009_13667246_13668040
CI01000009_13761020_13794137.mRNA mRNA upstream 171832 13760110 ~ 13794188 (-) True CI01000009_13761020_13794137
CI01000009_13878935_13880850.mRNA mRNA upstream 288064 13876342 ~ 13880850 (-) True CI01000009_13878935_13880850
CI01000009_13946619_13952884.mRNA mRNA upstream 358221 13946499 ~ 13953721 (-) True CI01000009_13946619_13952884
CI01000009_13963789_13974296.mRNA mRNA upstream 374671 13962949 ~ 13974296 (-) True CI01000009_13963789_13974296
TU67286 other downstream 1292517 12288217 ~ 12289518 (-) False G59097
TU67287 other downstream 1293058 12288217 ~ 12288977 (-) True G59097
TU64878 other downstream 4721472 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 5154023 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 8076787 5502395 ~ 5505248 (-) False G53515
TU67750 other upstream 387110 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67748 other upstream 445286 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 1274119 14862397 ~ 14887464 (-) True G59811
TU68236 other upstream 1543826 15132104 ~ 15132503 (-) True G59941
TU68714 other upstream 1787982 15376260 ~ 15443047 (-) True G60362

Expression Profile