RNA id: TU67750



Basic Information


Item Value
RNA id TU67750
length 3227
RNA type TUCP
GC content 0.36
exon number 1
gene id CI01000009_13975122_13976026
representative True

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 13975099 ~ 13978614 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACTGGTCGTCAAGGAAGCTGTATGAATTGAAAACAAAAATGTGTTCGTTTATTTAGTTTTACAGGGCAGCAATTACATTTTGTAAGTATCATACAGCCTCAAAAATGCAAACGAGATGAGAGGATAGTATTTGAATCTTCATCTGCCATTGGATGTCCCATGGCCGACTATCTATGTAAACAAATATACATTGTATAGACTACAGACAAAGGTCAGGTTTTACAGGAGTTTATAAGCACTATATAAAGGAAACTACTTTAGAGCATCGTGCACTACGCTTGTATCACCTGTACTCTCTGTTATTTGCTACTTATTGCTGAGCAAGTGTTGCTTTTTTGTACATTTAAAGATTTTCTGCCTTTCTCTCTATAAACAGCTCAACAAAGCAGCAAGAATGTACTTGTTCGGGACCAGAAAGGTAAGCATTACTATGTGCCACCCTGTAGCAGCAACAGCAATGTTCTCAATTCTGTGTGAATCCAAAGGATCTGTATCCTGTCTTTAAACCGAAACTATTATGTAAATTTAATTTGTGACTGTCCTGCAAGACTTAAGCTTTGGGCAGCTGGCGTTGGACATGTTTGCTCTCTATTAAGTCCATTACATTAGGGTTTGCTATTGCTATGATCTCATGTGAGTGACAGGTGGTAAAAATAATAATAATAATAATGTGCATGGATAGATCATGTATAATAAACCTTTAAAAGAGCTGTTTTTTTAGGTTAGGGTTAGGAAATTAGTTGTGATTGTTAGGATAAGGGGCTAGGGATTGCATTAGTATATTAATTAGGGGTGTAACAATATATCGTGTCACAATATATCGCAATAAAGAAATGCAACAATATGATTTGTGGATAGTGACAATATGTATTGTGTATAGTTCACCCGAAATGAAAATTACTGTGTGAGAAAAAATTGAAGTTTACAAATTTTTAGTGTCAGTTCTACATTGAACTACTATTTATAATGTTGAATATAATGTATAACAATGCATTGGGGGAATATTTGTGGGTCCTGATAATGCCAAATGTCTTGTGTTACCAGTAAAAAGTGGCCTACATTATTTTAAATATATCTAGTCAATGACAGTGCAAGCATGTTCATATTTTTCTGCATTTTCAGCTTCAGAATCATGAATATTTTTATTCTGGTATCAACATTGTCCTGTGCATTGGGTTACCAGCACCAAGTCCAAGCCTATTCATTTCCACCCCCAATGTAATAACAAATTTAGCATTTTAATCAACAGTTAATTTTTTGTTAACCTTTTACCATATGCCTTGAAGTATCGCAATAATATCATATCATGAGTTCAGTATTGTGATATGTATGAAAGTGTGACATGAGGGTATCGTTACATCCCTAATATCAATATATGTCCTCACAAAGATAGCTATACAAACAGGTGTGTGTGTCTGTGTGCATGTCAGCAGTAGATTTAAAGATTTTATGTATAAAAGGCATGTAAATCAGGCCAAATATATGTAAATATAATCATGAAGCAACAATACAATAATTCCCAATATGCAAAAAATATATATAATAGTTTTTGTGAGAACTTGCCAACTCAGTTAGCTTACAAGTCAACTCCGTCAAACATAAAAACTGATGGAGTTGACGTCTTACGGAGTTGACAAAATTGAATATTTTTCCCATCTTAACCATGTGTTGTAACAGTGGAGCCATTTCGTTTTTTCCTCAGTTTTAGCTTTCTTATACACATAACAAAAATGCCAAGAGTTATTCCACAACTACTGTATTTACAGAAACTATTAGACTGGGAAGACGGAGTTGACATGTTAAAGCTGTGACGGCAGATAATTCAACATTATTTGTTTAAAATATAAAAAATATATATATAAAACTTCTAGGGCTATGTGTCCTACTGTGGCATCCAAAATGAGCTGGAAATAGGAAAGGGTCCTCACAGTTAAAGTTGACTATGGCATTGCCTGATTTATTCAGAATTACAAAATCTTGATGGAGTTGATGCAAAGTGAGGACACAACTTTGATAGGCATTTTTTATGGAAAATATAATTAAAAATTTACCTTTTGTATTGCTTAATATCTTAAGATCTTAAGATCTGTGCCTTTCAATTTAACTGTATAGTTTTTTTTTTTGCATTTTTAAACATTTTGTTAGGCAGTTTTACATTGTGACCTCATGCTGAGGACAGGTTAAATTACATGTGTTTTCCAGTATTCAAAATAATACTAAAAACTTTTTAAAAAAAAATATAAGCAATGAATGCCCTGAGTATACAGGTTTCCATCAGATGTAACTTTTTGAACATTTTTATGAATTTCTTCATTTTTAACATAAAGAGGGCTTTTGTGTGTAGACACGTTTTGTCCCTTATCTCAAGAATCAGTGGACTACAAAGGTCAGGTTTAACAGGTGTTACAGGTGTTTAAGTACTGGTACATAAACAAAACTCCTTTAGAGCATAGTGCACTTCACTCCTATCACCTGTACTCTCTGTTATTTGCTACTTATTGCTGAGGAAGAGTTGATTTTAGTTCTTACGACTACATTTATACATTTTCTGCTTTTCTCTCTCTAAACAGCACAACTAAGTAGTAAGAATGAGTACTTGTACAGGACCAGAAAATGCCAAAGTTGTAGTGATAGGTTCAGGTTTTGCAGGTTTGGCTGCTGCAGCCAGGTTGGTGAAGGGAGGATTTAAAAATGTTTTGGTACTTGAGGCAAAGGAGAGGGTTGGAGGTCGAGTTCACACCACTAAACCATTCACCGAGAATATCATTGAAATTGGAGCTAACTGGATTCACGGGCAGAAAGAAAACCCCCTGTTCAAGATTGCAAAAGAGAAGAACCTGCTATCCGAGGGACTGTCTGCACGCAAAAACATGTGCTTACCCCGTTCTGTAACTCCTCAAGATTACTTTTTCAAAGAAGATGGCAAGCAGGTCTCCACAAAAGTTGTAGATCAGGTGTGTTCGCACTTCAACAAGCTCACCGACAAAGCTTTTGATGATGAACTTGAGTGCAAGCACAGAAAACTAACTCTAGGTGCTTATCTGGACGATGCCTTTGGTGAATCTCCTTTAGCTTCAACAGAAGACGGCCAGCAAGTTTTTGAATGGTGCAAGAGGATCGAATGCACAGATGAGGCTTGCTCTAGCCTCTATGAGGTTTCTGCATCTCAGATTAGCTATTACACCGCTCTAGAGGGAGGATTTTTTAATACTTTGGGAACTGGTGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU67746 lncRNA downstream 34760 13939445 ~ 13940628 (-) True G59488
TU67747 lncRNA downstream 43707 13883972 ~ 13931681 (-) True G59489
TU67727 lncRNA downstream 110785 13826486 ~ 13864603 (-) True G59470
TU67730 lncRNA downstream 155392 13799998 ~ 13819996 (-) True G59472
TU67731 lncRNA downstream 187975 13700592 ~ 13787413 (-) True G59473
TU67749 lncRNA upstream 60710 14039324 ~ 14039893 (-) True G59491
TU67810 lncRNA upstream 97010 14075624 ~ 14075833 (-) True G59552
TU67870 lncRNA upstream 186278 14164892 ~ 14214853 (-) True G59602
TU67878 lncRNA upstream 197389 14176003 ~ 14176444 (-) True G59610
TU67894 lncRNA upstream 209771 14188385 ~ 14189163 (-) True G59626
CI01000009_13963789_13974296.mRNA mRNA downstream 1092 13962949 ~ 13974296 (-) True CI01000009_13963789_13974296
CI01000009_13946619_13952884.mRNA mRNA downstream 21667 13946499 ~ 13953721 (-) True CI01000009_13946619_13952884
CI01000009_13878935_13880850.mRNA mRNA downstream 94538 13876342 ~ 13880850 (-) True CI01000009_13878935_13880850
CI01000009_13761020_13794137.mRNA mRNA downstream 181200 13760110 ~ 13794188 (-) True CI01000009_13761020_13794137
CI01000009_13667246_13668040.mRNA mRNA downstream 306791 13666453 ~ 13668597 (-) True CI01000009_13667246_13668040
CI01000009_13983271_13988001.mRNA mRNA upstream 4594 13983208 ~ 13988348 (-) True CI01000009_13983271_13988001
CI01000009_13990326_14004387.mRNA mRNA upstream 11118 13989732 ~ 14004826 (-) True CI01000009_13990326_14004387
CI01000009_14012800_14024940.mRNA mRNA upstream 33336 14011950 ~ 14025231 (-) True CI01000009_14012800_14024940
CI01000009_14052206_14053489.mRNA mRNA upstream 73355 14051969 ~ 14053953 (-) True CI01000009_14052206_14053489
CI01000009_14201347_14205288.mRNA mRNA upstream 222501 14201115 ~ 14205887 (-) True CI01000009_14201347_14205288
TU67286 other downstream 1685870 12288217 ~ 12289518 (-) False G59097
TU67287 other downstream 1686411 12288217 ~ 12288977 (-) True G59097
TU64878 other downstream 5114825 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU63500 other downstream 5547376 8425821 ~ 8428012 (-) True G55814
TU60944 other downstream 8470140 5502395 ~ 5505248 (-) False G53515
TU67748 other upstream 54950 14033564 ~ 14037873 (-) True G59490
TU68092 other upstream 883783 14862397 ~ 14887464 (-) True G59811
TU68236 other upstream 1153490 15132104 ~ 15132503 (-) True G59941
TU68714 other upstream 1397646 15376260 ~ 15443047 (-) True G60362
TU68711 other upstream 1668161 15646775 ~ 15651888 (-) True G60359

Expression Profile