RNA id: TU66469


Basic Information

Item Value
RNA id TU66469
length 104
RNA type TUCP
GC content 0.46
exon number 1
gene id G58382
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 14039757 ~ 14039901 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGACTCCTGGCTTTGAGGAGCTATTGCTTGAGCTCCTATCACCTTACAAAGCGCAAATCTTCCAGAAGAAAGCACCAGCTGCTCTTTAACTGCTCTTCTTCTTCCAGCAACTAAAAATGAGGTGGTTTCTGCTCTTCTCTGAATGGTTTGTGGACTGGGCTCGTGGTACATACTGGTACCTGTTCGGCAGGAGAAGTGGACTGTGCAAGACGCCCATCAGTCCTCAAAGCTCACTAGCTATAGATGAAAGAAAAAAGAACAGAGTGCTTCGAAAAGAATTTGATGAATTTGAAGTGCCCAGAAACCTTGACGTCATCGTGATTGGCAGCGGTATTGGTGGTCTGACTGCAGCGGCAACTTTAGCCAAACTAGGAAAGAAAGTCCTGGTGTTGGAGCAAGACAAGCAGGCAGGANNNNNNNN

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
K09516 RETSAT; all-trans-retinol 13,14-reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66484 lncRNA upstream 15086 14011905 ~ 14018473 (+) False G58384
TU66485 lncRNA upstream 15086 14015113 ~ 14018473 (+) False G58384
TU66486 lncRNA upstream 15086 14015113 ~ 14018473 (+) False G58384
TU66487 lncRNA upstream 15086 14015113 ~ 14018473 (+) False G58384
TU66483 lncRNA upstream 15086 14015962 ~ 14018473 (+) True G58384
TU66536 lncRNA downstream 11076 14050977 ~ 14051404 (+) True G58421
TU66595 lncRNA downstream 57590 14097491 ~ 14097703 (+) True G58467
TU66619 lncRNA downstream 85419 14125320 ~ 14156231 (+) True G58489
TU66580 lncRNA downstream 158737 14198638 ~ 14201846 (+) True G58452
TU66577 lncRNA downstream 225022 14264923 ~ 14277555 (+) True CI01000009_14264935_14273006
CI01000009_14007631_14010487.mRNA mRNA upstream 22866 14007087 ~ 14010693 (+) True CI01000009_14007631_14010487
CI01000009_13942733_13946356.mRNA mRNA upstream 87154 13942521 ~ 13946405 (+) True CI01000009_13942733_13946356
CI01000009_13884165_13939556.mRNA mRNA upstream 93871 13883847 ~ 13939688 (+) True CI01000009_13884165_13939556
CI01000009_13811227_13837798.mRNA mRNA upstream 195164 13811076 ~ 13838395 (+) True CI01000009_13811227_13837798
CI01000009_13798741_13799037.mRNA mRNA upstream 234368 13796884 ~ 13799191 (+) True CI01000009_13798741_13799037
CI01000009_14095330_14128580.mRNA mRNA downstream 53744 14093645 ~ 14128582 (+) True CI01000009_14095330_14128580
CI01000009_14170062_14192930.mRNA mRNA downstream 129320 14169221 ~ 14193332 (+) True CI01000009_14170062_14192930
CI01000009_14242224_14243004.mRNA mRNA downstream 202216 14242117 ~ 14243724 (+) True CI01000009_14242224_14243004
CI01000009_14264935_14273006.mRNA mRNA downstream 223522 14263423 ~ 14273729 (+) False CI01000009_14264935_14273006
CI01000009_14296451_14314340.mRNA mRNA downstream 256550 14296451 ~ 14314349 (+) True CI01000009_14296451_14314340
TU66091 other upstream 889951 13140378 ~ 13143608 (+) True G58028
TU65732 other upstream 1010421 13006643 ~ 13023138 (+) True G57701
TU65722 other upstream 1115094 12906444 ~ 12918465 (+) True G57691
TU65711 other upstream 1141220 12825469 ~ 12892339 (+) False G57682
TU65712 other upstream 1141220 12862134 ~ 12892339 (+) True G57682
TU66583 other downstream 206794 14246695 ~ 14258526 (+) True G58455
TU66694 other downstream 457035 14496936 ~ 14500423 (+) False G58558
TU66695 other downstream 457148 14497049 ~ 14501514 (+) True G58558
TU66789 other downstream 609823 14649724 ~ 14652022 (+) True G58649
TU66854 other downstream 726758 14766659 ~ 14773773 (+) False G58711

Expression Profile