RNA id: CI01000009_14248805_14255014.mRNA


Basic Information

Item Value
RNA id CI01000009_14248805_14255014.mRNA
length 2529
RNA type mRNA
GC content 0.41
exon number 5
gene id CI01000009_14248805_14255014
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 14247643 ~ 14255775 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAGGGGAAAATTACTGCTGCTGCCCCGAGTGTGAACTTCCGACAGCCAAGTCAGTAGGATATTAAATTTATTTAAAGATGCCTGGCTAATATCCTTTGTAGTCTGGTTTAACTATTTCCCTTAAGTCAACACTGCATATACAGGCAAGGCGCAAACATCAGAGATGTGTAAACATTTGGTCAAAGCGTACCTTGTAAACTAGCTCCTCTGTAATATCAACAATATTGGCTCCTGTGTTGAAAGTACAGGTATCGAGGGACGTAGTAAACTTGCAGGGTATTGCTCGCTGTGCGCTAATAAGTGGAGGAGAAAACCGATACCATTTACAGACGTATGACCTTCTCTTATTCTCCAGTTACAACACAAGGGATCAGAAGCTTTGGCCCATTAGCAAGAGTCATTAACACAAGTCTAAGTGCAAGTGGTCTAACACAACAACAGCACTGTTGCAGACTCGCTGGCTCCAAAGTAGGGTAAGATGCTCTGGTCCAGTTAAAACAAAGCAGAAAAAACCCCAAAGAAAAACAGACTTCTTCTTTGGATTGGGTACCATCGCTGGTCACTGTGTGAGTTCTTGGCAAGGTGTCGCAATAGTCCAGGTCTGACTGTATGTAGCAGGACTGGGCATGAGAATAATGCTCTGCTGTTTCTCCTTTGGAAAACAACACTCAATGGTCCCAACTTCTAAGAAATGGAGACAATCTCAACATTGACTGCAATGCCTGAAACAACACTGTCAACCTCTATAGGACCCCCAGAATGGGGGTTACGACACCCAGAGCGAAGCAGAGGAACAGGTCACAGTGTGGAATGACGGGGAGAAGCAAGGATAGTGTGCAGAAACCAGCTGGCCGGCACAGCTGGGGCTCATGGAACCCACCGGGTGACATCTGCAGTTCTGAGGCCAAGGGCGGACAAGCTTTCCTCCATCCAACATCAACATCAGCCTGCGCTCTATTCTGTCTCTATCCCAACGCTACACAACATCTGGTCATCTACAACACCCCCAGACACAGCAAGCCAGGCACACACAAGCCAAACCCCGGCAACCGTTTGCTTGACAGAAAGACTGATATCCACAAAGGGTTCATCCAATCTGCTGTATATCATTACACAGGAATTATGTTCAGAGAAAACCTCATTAACCCCACCTGCAATTCAGTGACACAAAAAGCCCTGAGGAAGAAAAATAAAAAGGAGCTGGAGGTGACGCACAGCAGAAATGCCAGTTTCTTGGAGGAGGAATTTGAGAACAAAGCTGCCATTCTGCTTTTCCCAGAAACAGGGTTACGAAGAAAAGATCTTCGTTATGTGTTGAATTCCAATGAAGATAAAGATGAGACTTCGGTCCTGACGATCAGCTGAGACAGGTCATTAGTACCTCCTGCCTGAGAGACAGACACTCAAACTCATTAATACATAGGATATTTTCCCTCAGGGAGCTCAGGGCATCATTCATCTCCTGTGTGTTTTTTTTCCTCTCAAGCACTGCTGTGAAATTCCCACTCCGCTGAACTTGCAAAAAGCTCCTACATCCCCGAGCAGCCCAGGATGAATGAGCAATCTACCGGCAAGTCACTCGAGAACTACAAACGGCAGGCCTGAGAGGAAAACTTTATGGCATGGAAATGGTTTTTTGTATTGTTTAAACTCTGGCAAATGTGAGGAACACTTTTAAATGTTACAGAACAACATTGGCTGAAAACAAATGCTGGGTCAGGGGGTTAGAATACATGCCTTAAACACATGGGACTTACGTGGAACATGTAGATTTGATTCCGTGTGACTGATTTTGTGAATCGATGTGTTTCATGAAACATCTTTTGTTGTCAGTATTGACTTACCCGTATGTCTTTTCAAATTCATATGACGTTTTTCTACTGAACAAGTGAGTTTTTGAAGAATATCCAGGTTTATTTTTTCCATATAATGAAAGTCAATTAAACTGGGGCTGTCAAGCTACAAAATTATTAAAATAAATAAATAAATAAATAAATAAATAAAAGTGGTCCATATGATTAGATTGTTGTATTATACGTCTTCTGAAGCCATGTAAAAGCTTACATATAAAATATTAAACTGTACACTACCTTTCAAAAGTTTGGGGTCAGTAGGATTTTTTATTAGTAATTTTATTCAGCAATTATGCATTAAAATAGATTGGCATTATTGGCATTTACCCAAACATGAGTTCATAAAAAGCAGTGTCTGAAATTCATGACCATCCACTTCACAAAACCAGCCAATCATTTGTTAATGAGACTGATTAAGCTTTCAGTGATTAGCAAACTGTAAAATGTCCAAATCGTATGAAAAGTCAAACAGAGTGAGCAGAAACCTGTAGACATAACACAATCTCTGAGGGGTTCATTTCAGCAAAGCCAGACCTCTGAGATACCAATACGAGTATATCAATTGTTAATAAGAGCTGGATGATGTGAACTTTTGAAATACACATGTTTGAGGGATCACAGCTCTTTGAAGCTACAAAAACACAGGTAGGAAACCCTAATACTGATGTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67870 lncRNA downstream 32790 14164892 ~ 14214853 (-) True G59602
TU67904 lncRNA downstream 46643 14199911 ~ 14201000 (-) True G59636
TU67894 lncRNA downstream 58480 14188385 ~ 14189163 (-) True G59626
TU67878 lncRNA downstream 71199 14176003 ~ 14176444 (-) True G59610
TU67810 lncRNA downstream 171810 14075624 ~ 14075833 (-) True G59552
TU67860 lncRNA upstream 227047 14482822 ~ 14487015 (-) True CI01000009_14476688_14573629
TU67858 lncRNA upstream 358323 14614098 ~ 14711193 (-) True G59590
TU67851 lncRNA upstream 427094 14682869 ~ 14684152 (-) True G59583
TU68031 lncRNA upstream 460343 14716118 ~ 14716332 (-) True G59754
TU68045 lncRNA upstream 480242 14736017 ~ 14736281 (-) True G59768
CI01000009_14201347_14205288.mRNA mRNA downstream 41756 14201115 ~ 14205887 (-) True CI01000009_14201347_14205288
CI01000009_14052206_14053489.mRNA mRNA downstream 193690 14051969 ~ 14053953 (-) True CI01000009_14052206_14053489
CI01000009_14012800_14024940.mRNA mRNA downstream 222412 14011950 ~ 14025231 (-) True CI01000009_14012800_14024940
CI01000009_13990326_14004387.mRNA mRNA downstream 242817 13989732 ~ 14004826 (-) True CI01000009_13990326_14004387
CI01000009_13983271_13988001.mRNA mRNA downstream 259295 13983208 ~ 13988348 (-) True CI01000009_13983271_13988001
CI01000009_14342067_14344332.mRNA mRNA upstream 86212 14341987 ~ 14344934 (-) True CI01000009_14342067_14344332
CI01000009_14476688_14573629.mRNA mRNA upstream 219949 14475724 ~ 14573629 (-) False CI01000009_14476688_14573629
CI01000009_14626182_14652953.mRNA mRNA upstream 370056 14625831 ~ 14653259 (-) True CI01000009_14626182_14652953
CI01000009_14763341_14773678.mRNA mRNA upstream 507437 14763212 ~ 14773681 (-) True CI01000009_14763341_14773678
CI01000009_14776978_14779978.mRNA mRNA upstream 521084 14776859 ~ 14781953 (-) True CI01000009_14776978_14779978
TU67748 other downstream 209770 14033564 ~ 14037873 (-) True G59490
TU67750 other downstream 269029 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67286 other downstream 1958125 12288217 ~ 12289518 (-) False G59097
TU67287 other downstream 1958666 12288217 ~ 12288977 (-) True G59097
TU64878 other downstream 5387080 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555
TU68092 other upstream 606622 14862397 ~ 14887464 (-) True G59811
TU68236 other upstream 876329 15132104 ~ 15132503 (-) True G59941
TU68714 other upstream 1120485 15376260 ~ 15443047 (-) True G60362
TU68711 other upstream 1391000 15646775 ~ 15651888 (-) True G60359

Expression Profile