RNA id: CI01000009_14474300_14474593.mRNA



Basic Information


Item Value
RNA id CI01000009_14474300_14474593.mRNA
length 471
RNA type mRNA
GC content 0.47
exon number 1
gene id CI01000009_14474300_14474593
representative False

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 14471796 ~ 14474770 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGAAAAAAAGTTCATGTCGAAAGCACCAGCTCTCACATCTAACAAAAAAACATGAGTCTATGTCCTGCTCAAAAGTTAAGTGTCCCTGCGGACAGACCAGGATACACAATCCTGGACTTGCTGCCACGGACAGAGACAGACTAACATGGCTGAGACGTTTGTCGCACTCTGGGTGTCACGGAGATTTCTTCAGGCCGTTTCGGATCCCGTGCTCAAAGTGCGCACATCGCGGGACAAAAAATGAAACGGATGGAGAGAGTAGAGTGACGTCAGAGGCCTTGAAGAGGCTCTGAGCTGAGAGGGTCACCAAGGCAGTCGAGCGGACCTTCTACAATGGAGGTTCCTCTTCCATAGGCTCGTCTTCTGTCCTGTTGGGCGACACACACACATGTTCTTAGTTACGTCTTACATGAGGTTAACTAGTGATTGTCAATGACTTCTCTAGACATTCATAACTTATAAAATCACAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66582 lncRNA upstream 70718 14402649 ~ 14403582 (+) True G58454
TU66575 lncRNA upstream 71910 14393814 ~ 14402390 (+) True G58447
TU66584 lncRNA upstream 74949 14304940 ~ 14399351 (+) True G58456
TU66577 lncRNA upstream 196745 14264923 ~ 14277555 (+) True CI01000009_14264935_14273006
TU66580 lncRNA upstream 272454 14198638 ~ 14201846 (+) True G58452
TU66692 lncRNA downstream 22166 14496936 ~ 14500246 (+) False G58558
TU66693 lncRNA downstream 22279 14497049 ~ 14500246 (+) False G58558
TU66731 lncRNA downstream 73480 14548250 ~ 14582261 (+) True G58591
TU66705 lncRNA downstream 98492 14573262 ~ 14584776 (+) True G58568
TU66753 lncRNA downstream 110286 14585056 ~ 14585281 (+) True G58613
CI01000009_14432830_14450364.mRNA mRNA upstream 22758 14432716 ~ 14451542 (+) True CI01000009_14432830_14450364
CI01000009_14380226_14386430.mRNA mRNA upstream 87434 14380226 ~ 14386866 (+) True CI01000009_14380226_14386430
CI01000009_14348389_14374515.mRNA mRNA upstream 98617 14348389 ~ 14375683 (+) True CI01000009_14348389_14374515
CI01000009_14296451_14314340.mRNA mRNA upstream 159951 14296451 ~ 14314349 (+) True CI01000009_14296451_14314340
CI01000009_14264935_14273006.mRNA mRNA upstream 200571 14263423 ~ 14273729 (+) False CI01000009_14264935_14273006
CI01000009_14581261_14582899.mRNA mRNA downstream 106110 14580880 ~ 14582994 (+) True CI01000009_14581261_14582899
CI01000009_14595691_14611767.mRNA mRNA downstream 120666 14595436 ~ 14612569 (+) False CI01000009_14595691_14611767
CI01000009_14616605_14620028.mRNA mRNA downstream 140601 14615371 ~ 14620238 (+) True CI01000009_14616605_14620028
CI01000009_14659692_14664324.mRNA mRNA downstream 184409 14659179 ~ 14664333 (+) True CI01000009_14659692_14664324
CI01000009_14682045_14685381.mRNA mRNA downstream 206884 14681654 ~ 14685420 (+) True CI01000009_14682045_14685381
TU66583 other upstream 215774 14246695 ~ 14258526 (+) True G58455
TU66469 other upstream 434399 14039798 ~ 14039901 (+) True G58382
TU66462 other upstream 434399 14039757 ~ 14039901 (+) True G58382
TU66091 other upstream 1330692 13140378 ~ 13143608 (+) True G58028
TU65732 other upstream 1451162 13006643 ~ 13023138 (+) True G57701
TU66694 other downstream 22166 14496936 ~ 14500423 (+) False G58558
TU66695 other downstream 22279 14497049 ~ 14501514 (+) True G58558
TU66789 other downstream 174954 14649724 ~ 14652022 (+) True G58649
TU66854 other downstream 291889 14766659 ~ 14773773 (+) False G58711
TU66856 other downstream 293170 14767940 ~ 14771757 (+) True G58711

Expression Profile