Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU66834 |
| length | 554 |
| RNA type | TUCP |
| GC content | 0.49 |
| exon number | 1 |
| gene id | G58694 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 14899398 ~ 14955795 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU66887 | lncRNA | upstream | 93034 | 14830963 ~ 14832195 (+) | True | G58738 |
| TU66885 | lncRNA | upstream | 111568 | 14813397 ~ 14813661 (+) | True | G58736 |
| TU66884 | lncRNA | upstream | 111949 | 14813016 ~ 14813280 (+) | True | G58735 |
| TU66838 | lncRNA | upstream | 147913 | 14775937 ~ 14777316 (+) | True | G58695 |
| TU66861 | lncRNA | upstream | 160550 | 14763822 ~ 14764679 (+) | True | G58713 |
| TU66848 | lncRNA | downstream | 794 | 14956589 ~ 14956818 (+) | True | G58705 |
| TU66843 | lncRNA | downstream | 1329 | 14957124 ~ 14958723 (+) | True | G58700 |
| TU66846 | lncRNA | downstream | 3295 | 14959090 ~ 14959711 (+) | True | G58703 |
| TU66844 | lncRNA | downstream | 4134 | 14959929 ~ 14960188 (+) | True | G58701 |
| TU66839 | lncRNA | downstream | 4964 | 14960759 ~ 14965125 (+) | True | G58696 |
| CI01000009_14916323_14920716.mRNA | mRNA | upstream | 4434 | 14916265 ~ 14920795 (+) | True | CI01000009_14916323_14920716 |
| CI01000009_14862429_14898325.mRNA | mRNA | upstream | 26680 | 14861732 ~ 14898549 (+) | True | CI01000009_14862429_14898325 |
| CI01000009_14857765_14859526.mRNA | mRNA | upstream | 65593 | 14857713 ~ 14859636 (+) | False | CI01000009_14857765_14859526 |
| CI01000009_14682045_14685381.mRNA | mRNA | upstream | 239809 | 14681654 ~ 14685420 (+) | True | CI01000009_14682045_14685381 |
| CI01000009_14659692_14664324.mRNA | mRNA | upstream | 260896 | 14659179 ~ 14664333 (+) | True | CI01000009_14659692_14664324 |
| CI01000009_14976078_14977321.mRNA | mRNA | downstream | 19976 | 14975771 ~ 14977424 (+) | True | CI01000009_14976078_14977321 |
| CI01000009_15415868_15427139.mRNA | mRNA | downstream | 457379 | 15413174 ~ 15427198 (+) | True | CI01000009_15415868_15427139 |
| CI01000009_15610515_15613753.mRNA | mRNA | downstream | 654237 | 15610032 ~ 15613753 (+) | True | CI01000009_15610515_15613753 |
| CI01000009_15625341_15626360.mRNA | mRNA | downstream | 669364 | 15625159 ~ 15626403 (+) | True | CI01000009_15625341_15626360 |
| CI01000009_15637754_15643935.mRNA | mRNA | downstream | 681855 | 15637650 ~ 15643935 (+) | True | CI01000009_15637754_15643935 |
| TU66845 | other | upstream | 66585 | 14819219 ~ 14837553 (+) | True | G58702 |
| TU66854 | other | upstream | 151456 | 14766659 ~ 14773773 (+) | False | G58711 |
| TU66856 | other | upstream | 153472 | 14767940 ~ 14771757 (+) | True | G58711 |
| TU66789 | other | upstream | 273207 | 14649724 ~ 14652022 (+) | True | G58649 |
| TU66695 | other | upstream | 423715 | 14497049 ~ 14501514 (+) | True | G58558 |
| TU68340 | other | downstream | 396252 | 15352047 ~ 15376169 (+) | False | G60028 |
| TU68341 | other | downstream | 396252 | 15352047 ~ 15357846 (+) | True | G60028 |
| TU68607 | other | downstream | 752197 | 15707992 ~ 15712005 (+) | True | CI01000009_15708273_15712002 |
| TU68648 | other | downstream | 802384 | 15758179 ~ 15758310 (+) | True | G60302 |
