RNA id: CI01000009_14961220_14973307.mRNA



Basic Information


Item Value
RNA id CI01000009_14961220_14973307.mRNA
length 1547
RNA type mRNA
GC content 0.46
exon number 9
gene id CI01000009_14961220_14973307
representative True

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 14960980 ~ 14973405 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTGAACGCACAAAAACAATCTATTTAATCTATGGGTTTACAGCTCACGTTTAAAAAATTAAACATACAGAATGTAAGCAGACAGCAGGGCTGTAACCATGTGGTTTAGCAGAAGACGCCGACCTGTTGAAACCTCCTGTCATGTGCTTCGGGGTGGTGGAGGGGGAGCCGCAGTGTCACGTTTCTTTAGGGAAGGAGAACAAAAGGTGCCTAATTTCTTGCCTGAAGCACAGGAGTCCAAACCTGCGGGGAAATCTGTACAGAAATTTCAGTCTGCCAAGTCATGGGTTGCGGGATTGATTTCAAAGAGACAGCACCATGCTCTGATTGTAACTTCAGAAGCCAGGAAACCAATTCCTGTAATGACCAGGCACCCGCCCCATACGTCTCCAGATCATGAGTCAATAGAGCATGATGATACAGTGAAGCCAGACACGACTGAAGACCAGAGTCCTAAAATTCCCCTTAAAATTCCAGATGTAATCAACAGCAAGAAGCATGCTGCCGTGCGCAAGGACAAGAAGAAACAACAGGAGAAGCTTCGGTCACTGGGGCCGATGGATTACTCCCCCCTTCCCATCGACAAGCATGAGCCTGAATTTGGTCCCTGCAGAAGGAAGCTGGATGGAATCATTCAAAGTATGAAAGACACTTCACGCGTCATGGCTCTTTCCCTCTACCTGCCTAACTGTGACAGGAAGGGCTTCTTCAAGCGCAAGCAGTGCAAGCCCTCCCGTGGCCGAAAACGAGGCATCTGCTGGTGCGTGGACAAATATGGCGTGCAGCTGCCCGGCACTGACTACAGCGGCGGTAACATCCAGTGCAAGGATTTGGAGAACAGCAACAACAACGAAAAAGAAAAGGCCATTTCTGGAATCGTTTCGTATCAGATATTGTGGCATCTGGGCCGAGTTAAAATCGAGACAGATGCTGTAACCCTTAAACGCTCCCAGCATTCGCGTTTGAACTTTGACGGACGTTCGCCGTGCAGAGCGGGCGAAATCAGTAATCAGAGTTATCCAGGTCCTGATCCATGCCGAAAGCCCCCTCCCCCATTTAAAGAAAGCAGCTTGCACTTAATTCCTTACCTTGCCACACGTTTAGTGCCGTCTCAAAGTGAATCTCAGTTCAGTAATACAACTCTACCAATCACAGTCTCTTCTCCATCTACTCTTAATAGACTTTGCGTCTCAGTGATATCCGGGGAGAAGGAGAGCGGAGGTAAAAGACTATCGATTGCCAGGACGCAGCATGTTGCTTTTGTGCTTATCTGCTTTCATCAGATTCCGAATCTCCTACTTGGGTAGACAGCAGTGTTCATAACTCACACTACAGTAGAAACGACAGGTTTTCTTTCTTTCTCTGAATGCATAACAGTTTTTTTTTTTACTTTATTGATTTTTTTCTCTTTTTTTTTTGTGGATGAGAAAAGACTTGATGATTGACCACCTAAATGTGGCTTAAACTGGCATGTGAAAAAGACCCATTAGTGGCTGGAGGACTCTAAAAATGTTCAGCATTTGGAACTCTTATTAAAAACCAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU68104 lncRNA downstream 69767 14889076 ~ 14891213 (-) False G59818
TU68101 lncRNA downstream 69767 14890237 ~ 14891213 (-) True G59818
TU68074 lncRNA downstream 146696 14814079 ~ 14814284 (-) True G59794
TU68045 lncRNA downstream 224699 14736017 ~ 14736281 (-) True G59768
TU68031 lncRNA downstream 244648 14716118 ~ 14716332 (-) True G59754
TU68108 lncRNA upstream 3284 14976689 ~ 14977258 (-) True G59821
TU68190 lncRNA upstream 117549 15090954 ~ 15091746 (-) True G59898
TU68191 lncRNA upstream 119069 15092474 ~ 15092737 (-) True G59899
TU68208 lncRNA upstream 129198 15102603 ~ 15102820 (-) True G59913
TU68222 lncRNA upstream 140354 15113759 ~ 15113970 (-) True G59927
CI01000009_14905408_14907785.mRNA mRNA downstream 52903 14904489 ~ 14908077 (-) True CI01000009_14905408_14907785
CI01000009_14776978_14779978.mRNA mRNA downstream 179027 14776859 ~ 14781953 (-) True CI01000009_14776978_14779978
CI01000009_14763341_14773678.mRNA mRNA downstream 187299 14763212 ~ 14773681 (-) True CI01000009_14763341_14773678
CI01000009_14626182_14652953.mRNA mRNA downstream 307721 14625831 ~ 14653259 (-) True CI01000009_14626182_14652953
CI01000009_14476688_14573629.mRNA mRNA downstream 387351 14475724 ~ 14573629 (-) False CI01000009_14476688_14573629
CI01000009_14974529_14974816.mRNA mRNA upstream 637 14974042 ~ 14975420 (-) True CI01000009_14974529_14974816
CI01000009_15229965_15235247.mRNA mRNA upstream 256252 15229657 ~ 15235528 (-) True CI01000009_15229965_15235247
CI01000009_15301177_15304489.mRNA mRNA upstream 327692 15301097 ~ 15304500 (-) True CI01000009_15301177_15304489
CI01000009_15318811_15390382.mRNA mRNA upstream 345406 15318811 ~ 15390382 (-) False CI01000009_15318811_15390382
CI01000009_15483720_15484321.mRNA mRNA upstream 510304 15483709 ~ 15484321 (-) True CI01000009_15483720_15484321
TU68092 other downstream 73516 14862397 ~ 14887464 (-) True G59811
TU67748 other downstream 923107 14033564 ~ 14037873 (-) True G59490
TU67750 other downstream 982366 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67286 other downstream 2671462 12288217 ~ 12289518 (-) False G59097
TU68236 other upstream 158699 15132104 ~ 15132503 (-) True G59941
TU68714 other upstream 402855 15376260 ~ 15443047 (-) True G60362
TU68711 other upstream 673370 15646775 ~ 15651888 (-) True G60359

Expression Profile