RNA id: CI01000009_15229965_15235247.mRNA


Basic Information

Item Value
RNA id CI01000009_15229965_15235247.mRNA
length 874
RNA type mRNA
GC content 0.37
exon number 2
gene id CI01000009_15229965_15235247
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15229657 ~ 15235528 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACATGGAAAATCATTTAAAAAAAAAAAACTATACAGATTATGTGATCAGAAGCTCTGTCTGTCCAACAGTAATAAGTACAGATTATTTCACAGACATTACTTAAACAAAACAAAGTGTTCTGAGACATGTTCAAGCACAAATGAGTTACATGACAAAGTATAATACATATTAAACAGGGTTAGGGATTTGTTCAGAATTTTCCCACATCAAGTGTTTCTTGAAAGACACGACTAGGAGAGAGATGCTAAGATCAGAGAAATGAAATCTGGCAAGCCGCTATGGAAAAAAGAGCATGCTGTTTCAAGTTCTTCACGGAATACAGAGGATATCGAGTGAGAAATGGAGGGAAAAGCACTGAGATTGTAAAAAGACCAAATGTTCTCTATATGACACATCTGGAGGTTCCATGGGCCAAGTTCAATCTGCTCTATGCTGAGTTTTTGGCCCTAGTCAGGGTGTCTTACAGGTTCCTCCTTACAGTTGCGCCTTCATCACGGGCCCCGGAGCAACTGCTGTTGCACAGAAGGGCGAGATTGGTGGCGTGGTTTCAAAAACTACCGTGAACAAACACCGAAGAGTATCCAGGAGGAGATTATCATTGGTATCCGAAAACAGATTTATTCTCACATTTTCCACTGAATTATGTGATCACTGTCCGTTTTCTTCAATGTGTGCGAGTGTTATGATTAGGAAGAGTGCATTTTAGATCTGTCAATCATCATGTAATCATTTCTCCTGCTCTTCCGTATATAAAAATTGAGAAATACTTTTCTACAGATGAAATATGAAAGCAAATAGACATATGATTATGACGATATGTTGTGTTTTTTTTGTTTTTTTATGCAGCTCACGGTATTTTTATAACAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68737 lncRNA downstream 12377 15217079 ~ 15217280 (-) True G60384
TU68298 lncRNA downstream 44173 15185264 ~ 15185484 (-) True G59996
TU68270 lncRNA downstream 66172 15163280 ~ 15163485 (-) True G59974
TU68258 lncRNA downstream 76757 15151602 ~ 15152900 (-) False G59963
TU68259 lncRNA downstream 76757 15151602 ~ 15152900 (-) True G59963
TU68771 lncRNA upstream 39261 15274789 ~ 15275112 (-) True G60418
TU68775 lncRNA upstream 49216 15284744 ~ 15284980 (-) True G60422
TU68779 lncRNA upstream 52650 15288178 ~ 15288394 (-) True G60426
TU68783 lncRNA upstream 56919 15292447 ~ 15292685 (-) True G60430
TU68723 lncRNA upstream 76003 15311531 ~ 15320285 (-) True G60370
CI01000009_14974529_14974816.mRNA mRNA downstream 254237 14974042 ~ 14975420 (-) True CI01000009_14974529_14974816
CI01000009_14961220_14973307.mRNA mRNA downstream 256252 14960980 ~ 14973405 (-) True CI01000009_14961220_14973307
CI01000009_14905408_14907785.mRNA mRNA downstream 321580 14904489 ~ 14908077 (-) True CI01000009_14905408_14907785
CI01000009_14776978_14779978.mRNA mRNA downstream 447704 14776859 ~ 14781953 (-) True CI01000009_14776978_14779978
CI01000009_14763341_14773678.mRNA mRNA downstream 455976 14763212 ~ 14773681 (-) True CI01000009_14763341_14773678
CI01000009_15301177_15304489.mRNA mRNA upstream 65569 15301097 ~ 15304500 (-) True CI01000009_15301177_15304489
CI01000009_15318811_15390382.mRNA mRNA upstream 83283 15318811 ~ 15390382 (-) False CI01000009_15318811_15390382
CI01000009_15483720_15484321.mRNA mRNA upstream 248181 15483709 ~ 15484321 (-) True CI01000009_15483720_15484321
CI01000009_15504401_15585060.mRNA mRNA upstream 268818 15504346 ~ 15585829 (-) False CI01000009_15504401_15585060
CI01000009_15654061_15662554.mRNA mRNA upstream 418232 15653760 ~ 15663026 (-) False CI01000009_15654061_15662554
TU68236 other downstream 97154 15132104 ~ 15132503 (-) True G59941
TU68092 other downstream 342193 14862397 ~ 14887464 (-) True G59811
TU67748 other downstream 1191784 14033564 ~ 14037873 (-) True G59490
TU67750 other downstream 1251043 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67286 other downstream 2940139 12288217 ~ 12289518 (-) False G59097
TU68714 other upstream 140732 15376260 ~ 15443047 (-) True G60362
TU68711 other upstream 411247 15646775 ~ 15651888 (-) True G60359

Expression Profile