RNA id: CI01000009_15301177_15304489.mRNA


Basic Information

Item Value
RNA id CI01000009_15301177_15304489.mRNA
length 493
RNA type mRNA
GC content 0.55
exon number 3
gene id CI01000009_15301177_15304489
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15301097 ~ 15304500 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGGCTGAGCCATGCCTGTAGGAGGGGGAGCCGAATGTGGAACCCCAAGAGGGATCAGGTGGTATCGCTCTCTCTGCATCTGTATTGTATGGGTGCGAGGCTCCCGTGCTTTGTCTTACCACAGGGGGCCCTTCTGCGCTAATGGTCCCTTGCTCATCGGCAGGGATCTGCGGTCGACGGCACTGGGGTCGTCGTGGACTCCTGTCCCAGGATCTCCTCCCCAGACCCTGAGAATACCATTCATCCTGCCTGAACGTATCACAACTTTCATCACGGCATTCTTTCCAGCGTCTGCAATGCCTGGAATGGGACGGACCAGTGATTCTTTTACATGGGCGCAGGCTCTCGGCAGGGAACTCCCTGACACCAGAACCAGTCTGGGCCTCCTGAGAGTGCATGTGGAGGTAGAGTAGTTCTCCCCCAGACTACAACCTGACTGATCCGACACGTATCGGCTATTGGGCCAAATATAACAGAAAAGCTGACAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68783 lncRNA downstream 8412 15292447 ~ 15292685 (-) True G60430
TU68779 lncRNA downstream 12703 15288178 ~ 15288394 (-) True G60426
TU68775 lncRNA downstream 16117 15284744 ~ 15284980 (-) True G60422
TU68771 lncRNA downstream 25985 15274789 ~ 15275112 (-) True G60418
TU68737 lncRNA downstream 83817 15217079 ~ 15217280 (-) True G60384
TU68723 lncRNA upstream 7031 15311531 ~ 15320285 (-) True G60370
TU68731 lncRNA upstream 198906 15503406 ~ 15510352 (-) True CI01000009_15504401_15585060
TU68790 lncRNA upstream 243661 15548161 ~ 15548460 (-) True G60437
TU68792 lncRNA upstream 245082 15549582 ~ 15549879 (-) True G60439
TU68795 lncRNA upstream 285157 15589657 ~ 15649377 (-) True G60442
CI01000009_15229965_15235247.mRNA mRNA downstream 65569 15229657 ~ 15235528 (-) True CI01000009_15229965_15235247
CI01000009_14974529_14974816.mRNA mRNA downstream 325677 14974042 ~ 14975420 (-) True CI01000009_14974529_14974816
CI01000009_14961220_14973307.mRNA mRNA downstream 327692 14960980 ~ 14973405 (-) True CI01000009_14961220_14973307
CI01000009_14905408_14907785.mRNA mRNA downstream 393020 14904489 ~ 14908077 (-) True CI01000009_14905408_14907785
CI01000009_14776978_14779978.mRNA mRNA downstream 519144 14776859 ~ 14781953 (-) True CI01000009_14776978_14779978
CI01000009_15318811_15390382.mRNA mRNA upstream 14311 15318811 ~ 15390382 (-) False CI01000009_15318811_15390382
CI01000009_15483720_15484321.mRNA mRNA upstream 179209 15483709 ~ 15484321 (-) True CI01000009_15483720_15484321
CI01000009_15504401_15585060.mRNA mRNA upstream 199846 15504346 ~ 15585829 (-) False CI01000009_15504401_15585060
CI01000009_15654061_15662554.mRNA mRNA upstream 349260 15653760 ~ 15663026 (-) False CI01000009_15654061_15662554
CI01000009_15693066_15694538.mRNA mRNA upstream 388494 15692994 ~ 15694629 (-) True CI01000009_15693066_15694538
TU68236 other downstream 168594 15132104 ~ 15132503 (-) True G59941
TU68092 other downstream 413633 14862397 ~ 14887464 (-) True G59811
TU67748 other downstream 1263224 14033564 ~ 14037873 (-) True G59490
TU67750 other downstream 1322483 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026
TU67287 other downstream 3012120 12288217 ~ 12288977 (-) True G59097
TU68714 other upstream 71760 15376260 ~ 15443047 (-) True G60362
TU68711 other upstream 342275 15646775 ~ 15651888 (-) True G60359

Expression Profile