RNA id: TU57650


Basic Information

Item Value
RNA id TU57650
length 280
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G50662
representative False

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 335039 ~ 335961 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAAGCATATTAAATGCAAAGTTGACTGGAAGGAAGAAATTGGGTAGGCAAAGGTGCACAAGCAACAGGGATGACCGCAAGCTTGAGAATACTGTCAAGTAAAGCCAATTCAAACACTTAAGAGAGCTTCACAATGAGTAGAATGAAGCCGGAGTCGGCGCATCAAGAGTCACCACACTCAGACATCTTCAGGAAAAGGACTACCAAGCCACTTCTGAACCAGAGACAACGTCAGAAGCATCTTACCTGGGCTAAGGAGAAAAAGAACTGGACAGTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57469 lncRNA upstream 112610 176066 ~ 222848 (+) True G50508
TU57439 lncRNA upstream 217458 117563 ~ 118000 (+) True G50480
TU57431 lncRNA upstream 236402 98697 ~ 99056 (+) True G50473
TU57432 lncRNA upstream 236472 97886 ~ 98986 (+) False G50473
TU57433 lncRNA upstream 238228 96684 ~ 97230 (+) True CI01000009_00094836_00095813
TU57660 lncRNA downstream 22741 358478 ~ 358706 (+) True G50664
TU57662 lncRNA downstream 44811 380548 ~ 380857 (+) True G50666
TU57615 lncRNA downstream 45477 381214 ~ 385408 (+) True G50627
TU57627 lncRNA downstream 52461 388198 ~ 388652 (+) True G50639
TU57621 lncRNA downstream 53013 388750 ~ 389122 (+) True G50633
CI01000009_00326208_00333904.mRNA mRNA upstream 1157 326208 ~ 334301 (+) True CI01000009_00326208_00333904
CI01000009_00318494_00322434.mRNA mRNA upstream 12403 318256 ~ 323055 (+) True CI01000009_00318494_00322434
CI01000009_00300778_00315275.mRNA mRNA upstream 20053 300778 ~ 315405 (+) True CI01000009_00300778_00315275
CI01000009_00260081_00285692.mRNA mRNA upstream 49747 259906 ~ 285711 (+) True CI01000009_00260081_00285692
CI01000009_00242093_00247335.mRNA mRNA upstream 88115 241961 ~ 247343 (+) True CI01000009_00242093_00247335
CI01000009_00343750_00344964.mRNA mRNA downstream 8013 343750 ~ 345290 (+) True CI01000009_00343750_00344964
CI01000009_00363403_00368182.mRNA mRNA downstream 27666 363403 ~ 368216 (+) True CI01000009_00363403_00368182
CI01000009_00378726_00379550.mRNA mRNA downstream 42989 378726 ~ 379804 (+) True CI01000009_00378726_00379550
CI01000009_00541592_00545933.mRNA mRNA downstream 205032 540769 ~ 545997 (+) True CI01000009_00541592_00545933
CI01000009_00547369_00551459.mRNA mRNA downstream 211632 547369 ~ 552216 (+) True CI01000009_00547369_00551459
TU57430 other upstream 239671 94202 ~ 94283 (+) True G50472
TU57948 other downstream 434104 769841 ~ 770233 (+) True G50920
TU57959 other downstream 1087110 1422847 ~ 1438355 (+) True G50926
TU58233 other downstream 1344409 1680146 ~ 1681966 (+) True G51122
TU58306 other downstream 1558498 1894235 ~ 1894364 (+) True G51182
TU58428 other downstream 1919362 2255099 ~ 2350486 (+) True G51274

Expression Profile