RNA id: TU57662


Basic Information

Item Value
RNA id TU57662
length 310
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G50666
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 380548 ~ 380857 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAAGATTTTTAGAATAATAATCGATCTCAAGTCCATATAACGCAGGCGTATGGGGTCCATCAAAGTTGATGCTTCAAAAACCACACAAACTGATGGTAATCCATACGACCCCTGTTGATGAATCAATTAAAGGGTTAGTTCACCCAAAAATGAAATTTCTGTCATTAATTACTTACCCTCATGTCGTTACAAACCGTAAGACATTTCATCCGTAAGACATTCATCAAAAACATTGAGATGTTTTTGATGAAATCTGACAGGTTTGGTAGAAAGAACGTAGAAAGCAATGTAATTACCACAATCAAGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57660 lncRNA upstream 21842 358478 ~ 358706 (+) True G50664
TU57656 lncRNA upstream 44587 335039 ~ 335961 (+) False G50662
TU57652 lncRNA upstream 44587 335458 ~ 335961 (+) True G50662
TU57650 lncRNA upstream 44811 335458 ~ 335737 (+) False G50662
TU57469 lncRNA upstream 157700 176066 ~ 222848 (+) True G50508
TU57615 lncRNA downstream 357 381214 ~ 385408 (+) True G50627
TU57627 lncRNA downstream 7341 388198 ~ 388652 (+) True G50639
TU57621 lncRNA downstream 7893 388750 ~ 389122 (+) True G50633
TU57619 lncRNA downstream 14518 395375 ~ 495961 (+) True G50631
TU57715 lncRNA downstream 123561 504418 ~ 504619 (+) True G50719
CI01000009_00378726_00379550.mRNA mRNA upstream 744 378726 ~ 379804 (+) True CI01000009_00378726_00379550
CI01000009_00363403_00368182.mRNA mRNA upstream 12332 363403 ~ 368216 (+) True CI01000009_00363403_00368182
CI01000009_00343750_00344964.mRNA mRNA upstream 35258 343750 ~ 345290 (+) True CI01000009_00343750_00344964
CI01000009_00326208_00333904.mRNA mRNA upstream 46247 326208 ~ 334301 (+) True CI01000009_00326208_00333904
CI01000009_00318494_00322434.mRNA mRNA upstream 57493 318256 ~ 323055 (+) True CI01000009_00318494_00322434
CI01000009_00541592_00545933.mRNA mRNA downstream 159912 540769 ~ 545997 (+) True CI01000009_00541592_00545933
CI01000009_00547369_00551459.mRNA mRNA downstream 166512 547369 ~ 552216 (+) True CI01000009_00547369_00551459
CI01000009_00603498_00605392.mRNA mRNA downstream 222371 603228 ~ 605392 (+) True CI01000009_00603498_00605392
CI01000009_00605366_00605964.mRNA mRNA downstream 224509 605366 ~ 606070 (+) True CI01000009_00605366_00605964
CI01000009_00608513_00609159.mRNA mRNA downstream 227656 608513 ~ 609375 (+) True CI01000009_00608513_00609159
TU57430 other upstream 284761 94202 ~ 94283 (+) True G50472
TU57948 other downstream 388984 769841 ~ 770233 (+) True G50920
TU57959 other downstream 1041990 1422847 ~ 1438355 (+) True G50926
TU58233 other downstream 1299289 1680146 ~ 1681966 (+) True G51122
TU58306 other downstream 1513378 1894235 ~ 1894364 (+) True G51182
TU58428 other downstream 1874242 2255099 ~ 2350486 (+) True G51274

Expression Profile