RNA id: TU57621


Basic Information

Item Value
RNA id TU57621
length 373
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G50633
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 388750 ~ 389122 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAATGGCTGTGAATTGGGGGCCGCGTTTTGAATGGCGGAGGATTTTGATATAAGAGAAGAGGAGTTTAAATTTGTTGCACAGCCCTATTTTTTTGAACCATGAGAGGCATCTAAGCTTACAATACTCCTACATTCTGCGTCATACATCACATCAGAGGATTACTCATTTGGCGTAAGTCGACTTGCGCATTCTGCGTACTGTCGTCCACCGGAGGCTTATTATTTGAATTGATAAAGTTTTAAATATGGATATTTTTCTTACAAAAATGTACCGCTTCACTTCAAAAAGCCTTTTTTTTTAAACTATTTGAATTATATGGACTACTTTTTTATGGATGGATGAATTATTTTTTACTTCAAAACGAGGCCCCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57627 lncRNA upstream 98 388198 ~ 388652 (+) True G50639
TU57615 lncRNA upstream 3342 381214 ~ 385408 (+) True G50627
TU57662 lncRNA upstream 7893 380548 ~ 380857 (+) True G50666
TU57660 lncRNA upstream 30044 358478 ~ 358706 (+) True G50664
TU57652 lncRNA upstream 52789 335458 ~ 335961 (+) True G50662
TU57619 lncRNA downstream 6253 395375 ~ 495961 (+) True G50631
TU57715 lncRNA downstream 115296 504418 ~ 504619 (+) True G50719
TU57733 lncRNA downstream 149049 538171 ~ 538511 (+) True G50735
TU57872 lncRNA downstream 201010 590132 ~ 590536 (+) False G50855
TU57876 lncRNA downstream 201010 590132 ~ 590613 (+) False G50855
CI01000009_00378726_00379550.mRNA mRNA upstream 8946 378726 ~ 379804 (+) True CI01000009_00378726_00379550
CI01000009_00363403_00368182.mRNA mRNA upstream 20534 363403 ~ 368216 (+) True CI01000009_00363403_00368182
CI01000009_00343750_00344964.mRNA mRNA upstream 43460 343750 ~ 345290 (+) True CI01000009_00343750_00344964
CI01000009_00326208_00333904.mRNA mRNA upstream 54449 326208 ~ 334301 (+) True CI01000009_00326208_00333904
CI01000009_00318494_00322434.mRNA mRNA upstream 65695 318256 ~ 323055 (+) True CI01000009_00318494_00322434
CI01000009_00541592_00545933.mRNA mRNA downstream 151647 540769 ~ 545997 (+) True CI01000009_00541592_00545933
CI01000009_00547369_00551459.mRNA mRNA downstream 158247 547369 ~ 552216 (+) True CI01000009_00547369_00551459
CI01000009_00603498_00605392.mRNA mRNA downstream 214106 603228 ~ 605392 (+) True CI01000009_00603498_00605392
CI01000009_00605366_00605964.mRNA mRNA downstream 216244 605366 ~ 606070 (+) True CI01000009_00605366_00605964
CI01000009_00608513_00609159.mRNA mRNA downstream 219391 608513 ~ 609375 (+) True CI01000009_00608513_00609159
TU57430 other upstream 292963 94202 ~ 94283 (+) True G50472
TU57948 other downstream 380719 769841 ~ 770233 (+) True G50920
TU57959 other downstream 1033725 1422847 ~ 1438355 (+) True G50926
TU58233 other downstream 1291024 1680146 ~ 1681966 (+) True G51122
TU58306 other downstream 1505113 1894235 ~ 1894364 (+) True G51182
TU58428 other downstream 1865977 2255099 ~ 2350486 (+) True G51274

Expression Profile