RNA id: TU57715


Basic Information

Item Value
RNA id TU57715
length 202
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G50719
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 504418 ~ 504619 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGTGAAATAAACATGACTAAACATCTGAAGGTATGTTAAAATATACAATACAACTTACCGAAATCCGTATCATGTCTTGTGTAATAGCTCAATCAGTGTTTCAACCTCGGAAAGACGTCAATAAAACAGCTTGTAAACAATGTCACGTAACGTCACATTTACCTCAGAAAAACATATTCAGTGACCATAAACTCATTAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57619 lncRNA upstream 8457 395375 ~ 495961 (+) True G50631
TU57621 lncRNA upstream 115296 388750 ~ 389122 (+) True G50633
TU57627 lncRNA upstream 115766 388198 ~ 388652 (+) True G50639
TU57615 lncRNA upstream 119010 381214 ~ 385408 (+) True G50627
TU57662 lncRNA upstream 123561 380548 ~ 380857 (+) True G50666
TU57733 lncRNA downstream 33552 538171 ~ 538511 (+) True G50735
TU57872 lncRNA downstream 85513 590132 ~ 590536 (+) False G50855
TU57876 lncRNA downstream 85513 590132 ~ 590613 (+) False G50855
TU57873 lncRNA downstream 85552 590171 ~ 590613 (+) True G50855
TU57903 lncRNA downstream 119115 623734 ~ 623957 (+) True G50881
CI01000009_00378726_00379550.mRNA mRNA upstream 124614 378726 ~ 379804 (+) True CI01000009_00378726_00379550
CI01000009_00363403_00368182.mRNA mRNA upstream 136202 363403 ~ 368216 (+) True CI01000009_00363403_00368182
CI01000009_00343750_00344964.mRNA mRNA upstream 159128 343750 ~ 345290 (+) True CI01000009_00343750_00344964
CI01000009_00326208_00333904.mRNA mRNA upstream 170117 326208 ~ 334301 (+) True CI01000009_00326208_00333904
CI01000009_00318494_00322434.mRNA mRNA upstream 181363 318256 ~ 323055 (+) True CI01000009_00318494_00322434
CI01000009_00541592_00545933.mRNA mRNA downstream 36150 540769 ~ 545997 (+) True CI01000009_00541592_00545933
CI01000009_00547369_00551459.mRNA mRNA downstream 42750 547369 ~ 552216 (+) True CI01000009_00547369_00551459
CI01000009_00603498_00605392.mRNA mRNA downstream 98609 603228 ~ 605392 (+) True CI01000009_00603498_00605392
CI01000009_00605366_00605964.mRNA mRNA downstream 100747 605366 ~ 606070 (+) True CI01000009_00605366_00605964
CI01000009_00608513_00609159.mRNA mRNA downstream 103894 608513 ~ 609375 (+) True CI01000009_00608513_00609159
TU57430 other upstream 408631 94202 ~ 94283 (+) True G50472
TU57948 other downstream 265222 769841 ~ 770233 (+) True G50920
TU57959 other downstream 918228 1422847 ~ 1438355 (+) True G50926
TU58233 other downstream 1175527 1680146 ~ 1681966 (+) True G51122
TU58306 other downstream 1389616 1894235 ~ 1894364 (+) True G51182
TU58428 other downstream 1750480 2255099 ~ 2350486 (+) True G51274

Expression Profile