RNA id: TU57733


Basic Information

Item Value
RNA id TU57733
length 341
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G50735
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 538171 ~ 538511 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGACATGATACGGATTTCGGTAAGTTGTACTGTGTATTTTAACATACCTTCAGATGTTTATTCATGTTTATTTCGCGCTGTAACTGGTATTAAAGCGGAGGAGAGGATGTTCACATGCGCTCCGTGCTGCCGCTTCTCTTTAACTGAGGCGCTAAAGCGATCTGTCACGTCACATTAAACAGCGCCAAAACGGTGTTTATTTTTTGAATCTCATAATAAGATGGACGTCATTTGAAATCTGAGACTTTGCTTCATATCAAAAGTAACAAAGCACAAAGATTATTGCGATTTATTGGTGGGAGGCGCTACATGTTCTGTTCATTTATCAACTGAAAACAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57715 lncRNA upstream 33552 504418 ~ 504619 (+) True G50719
TU57619 lncRNA upstream 42210 395375 ~ 495961 (+) True G50631
TU57621 lncRNA upstream 149049 388750 ~ 389122 (+) True G50633
TU57627 lncRNA upstream 149519 388198 ~ 388652 (+) True G50639
TU57615 lncRNA upstream 152763 381214 ~ 385408 (+) True G50627
TU57872 lncRNA downstream 51621 590132 ~ 590536 (+) False G50855
TU57876 lncRNA downstream 51621 590132 ~ 590613 (+) False G50855
TU57873 lncRNA downstream 51660 590171 ~ 590613 (+) True G50855
TU57903 lncRNA downstream 85223 623734 ~ 623957 (+) True G50881
TU57905 lncRNA downstream 97963 636474 ~ 636705 (+) True G50883
CI01000009_00378726_00379550.mRNA mRNA upstream 158367 378726 ~ 379804 (+) True CI01000009_00378726_00379550
CI01000009_00363403_00368182.mRNA mRNA upstream 169955 363403 ~ 368216 (+) True CI01000009_00363403_00368182
CI01000009_00343750_00344964.mRNA mRNA upstream 192881 343750 ~ 345290 (+) True CI01000009_00343750_00344964
CI01000009_00326208_00333904.mRNA mRNA upstream 203870 326208 ~ 334301 (+) True CI01000009_00326208_00333904
CI01000009_00318494_00322434.mRNA mRNA upstream 215116 318256 ~ 323055 (+) True CI01000009_00318494_00322434
CI01000009_00541592_00545933.mRNA mRNA downstream 2258 540769 ~ 545997 (+) True CI01000009_00541592_00545933
CI01000009_00547369_00551459.mRNA mRNA downstream 8858 547369 ~ 552216 (+) True CI01000009_00547369_00551459
CI01000009_00603498_00605392.mRNA mRNA downstream 64717 603228 ~ 605392 (+) True CI01000009_00603498_00605392
CI01000009_00605366_00605964.mRNA mRNA downstream 66855 605366 ~ 606070 (+) True CI01000009_00605366_00605964
CI01000009_00608513_00609159.mRNA mRNA downstream 70002 608513 ~ 609375 (+) True CI01000009_00608513_00609159
TU57430 other upstream 442384 94202 ~ 94283 (+) True G50472
TU57948 other downstream 231330 769841 ~ 770233 (+) True G50920
TU57959 other downstream 884336 1422847 ~ 1438355 (+) True G50926
TU58233 other downstream 1141635 1680146 ~ 1681966 (+) True G51122
TU58306 other downstream 1355724 1894235 ~ 1894364 (+) True G51182
TU58428 other downstream 1716588 2255099 ~ 2350486 (+) True G51274

Expression Profile