RNA id: TU57876


Basic Information

Item Value
RNA id TU57876
length 482
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G50855
representative False

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 590132 ~ 590613 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCGGGTATCTTTTGTTCTTTGAAACCACACTAATGGGGAAGACTGCTGACTTGGCAATGGTCCAGGAGACAATCATTGACACCCTCCACAAAGAGAGTAAGTCACAGAAGGTCATTACTGAATGGGGTGGCTGTTTACAGAGTGTATATCAAAGCATATTAAATGCAAAGTTGACTGGAAGGAAGAAATTGGGTAGGCAAAGGTGCACAAGCAACAGGGATGACCGCAAGCTTGACAATACTGTCAAGTAAAGCCAATTCAAACACTTGGGAGAGCTTCACAATGAGTAGAATGAAGCCGGAGTCAGCGCATCAAGAGTCACCACACTCAGACATCTTCAGGAAAAGGACTACCAAGCCACTTCTGAACCAGAGACAACGTCAGAAGCATCTTACCTGGGCTAAGGAGAAAAAGAACTGGACAGTGAACAGTGGTCGAAAGTCCTCTTTTCAGATAAAAGTAAATTTTGCATTTCANNNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57733 lncRNA upstream 51621 538171 ~ 538511 (+) True G50735
TU57715 lncRNA upstream 85513 504418 ~ 504619 (+) True G50719
TU57619 lncRNA upstream 94171 395375 ~ 495961 (+) True G50631
TU57621 lncRNA upstream 201010 388750 ~ 389122 (+) True G50633
TU57627 lncRNA upstream 201480 388198 ~ 388652 (+) True G50639
TU57903 lncRNA downstream 33121 623734 ~ 623957 (+) True G50881
TU57905 lncRNA downstream 45861 636474 ~ 636705 (+) True G50883
TU57902 lncRNA downstream 54172 644785 ~ 645049 (+) True G50880
TU57900 lncRNA downstream 103413 694026 ~ 695215 (+) True G50878
TU57924 lncRNA downstream 106992 697605 ~ 697840 (+) True G50902
CI01000009_00547369_00551459.mRNA mRNA upstream 37916 547369 ~ 552216 (+) True CI01000009_00547369_00551459
CI01000009_00541592_00545933.mRNA mRNA upstream 44135 540769 ~ 545997 (+) True CI01000009_00541592_00545933
CI01000009_00378726_00379550.mRNA mRNA upstream 210328 378726 ~ 379804 (+) True CI01000009_00378726_00379550
CI01000009_00363403_00368182.mRNA mRNA upstream 221916 363403 ~ 368216 (+) True CI01000009_00363403_00368182
CI01000009_00343750_00344964.mRNA mRNA upstream 244842 343750 ~ 345290 (+) True CI01000009_00343750_00344964
CI01000009_00603498_00605392.mRNA mRNA downstream 12615 603228 ~ 605392 (+) True CI01000009_00603498_00605392
CI01000009_00605366_00605964.mRNA mRNA downstream 14753 605366 ~ 606070 (+) True CI01000009_00605366_00605964
CI01000009_00608513_00609159.mRNA mRNA downstream 17900 608513 ~ 609375 (+) True CI01000009_00608513_00609159
CI01000009_00611583_00617762.mRNA mRNA downstream 20692 611305 ~ 617762 (+) True CI01000009_00611583_00617762
CI01000009_00620687_00621072.mRNA mRNA downstream 30074 620687 ~ 621537 (+) True CI01000009_00620687_00621072
TU57430 other upstream 494345 94202 ~ 94283 (+) True G50472
TU57948 other downstream 179228 769841 ~ 770233 (+) True G50920
TU57959 other downstream 832234 1422847 ~ 1438355 (+) True G50926
TU58233 other downstream 1089533 1680146 ~ 1681966 (+) True G51122
TU58306 other downstream 1303622 1894235 ~ 1894364 (+) True G51182
TU58428 other downstream 1664486 2255099 ~ 2350486 (+) True G51274

Expression Profile