RNA id: TU57903


Basic Information

Item Value
RNA id TU57903
length 224
lncRNA type intronic
GC content 0.27
exon number 1
gene id G50881
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 623734 ~ 623957 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAATTTTCAGCATCATTATTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGACTTTGGTGCTTTTTTTTTTTATATAAATAGAACATTAAAAAACAGCATTTATTTTAAATAGAAATCATTTGTAACAATATGCATGCATTTACTGTCACTTTTGATCAATTTAATGCACCTTTTCTGAATAAAAGTATTAATTTCTTTCAAACCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57876 lncRNA upstream 33121 590132 ~ 590613 (+) False G50855
TU57873 lncRNA upstream 33121 590171 ~ 590613 (+) True G50855
TU57872 lncRNA upstream 33198 590132 ~ 590536 (+) False G50855
TU57733 lncRNA upstream 85223 538171 ~ 538511 (+) True G50735
TU57715 lncRNA upstream 119115 504418 ~ 504619 (+) True G50719
TU57905 lncRNA downstream 12517 636474 ~ 636705 (+) True G50883
TU57902 lncRNA downstream 20828 644785 ~ 645049 (+) True G50880
TU57900 lncRNA downstream 70069 694026 ~ 695215 (+) True G50878
TU57924 lncRNA downstream 73648 697605 ~ 697840 (+) True G50902
TU57898 lncRNA downstream 103116 727073 ~ 728482 (+) True G50876
CI01000009_00620687_00621072.mRNA mRNA upstream 2197 620687 ~ 621537 (+) True CI01000009_00620687_00621072
CI01000009_00611583_00617762.mRNA mRNA upstream 5972 611305 ~ 617762 (+) True CI01000009_00611583_00617762
CI01000009_00608513_00609159.mRNA mRNA upstream 14359 608513 ~ 609375 (+) True CI01000009_00608513_00609159
CI01000009_00605366_00605964.mRNA mRNA upstream 17664 605366 ~ 606070 (+) True CI01000009_00605366_00605964
CI01000009_00603498_00605392.mRNA mRNA upstream 18342 603228 ~ 605392 (+) True CI01000009_00603498_00605392
CI01000009_00704243_00710805.mRNA mRNA downstream 80108 704065 ~ 710805 (+) True CI01000009_00704243_00710805
CI01000009_00719164_00724772.mRNA mRNA downstream 95207 719164 ~ 725051 (+) True CI01000009_00719164_00724772
CI01000009_00805606_00808374.mRNA mRNA downstream 180947 804904 ~ 808404 (+) True CI01000009_00805606_00808374
CI01000009_00852319_00853083.mRNA mRNA downstream 227285 851242 ~ 853461 (+) True CI01000009_00852319_00853083
CI01000009_00913995_00916434.mRNA mRNA downstream 290038 913995 ~ 916565 (+) True CI01000009_00913995_00916434
TU57430 other upstream 527947 94202 ~ 94283 (+) True G50472
TU57948 other downstream 145884 769841 ~ 770233 (+) True G50920
TU57959 other downstream 798890 1422847 ~ 1438355 (+) True G50926
TU58233 other downstream 1056189 1680146 ~ 1681966 (+) True G51122
TU58306 other downstream 1270278 1894235 ~ 1894364 (+) True G51182
TU58428 other downstream 1631142 2255099 ~ 2350486 (+) True G51274

Expression Profile