RNA id: TU57948



Basic Information


Item Value
RNA id TU57948
length 393
RNA type TUCP
GC content 0.43
exon number 1
gene id G50920
representative True

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 769841 ~ 770233 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTACATTGCAACACACTGCTTCCTCTATCTCATTTCTTTCACGAATGGAGGCGTCTGCCAGGGGTATCGCCTTGGATTCTAAGAACAGTGCAGTTCGGTTACACACTCCAGTTCTGTCGCAATCCCCCCCGTTTCAACGGGGTTCTTCTGACTCTAGTGAACAGCGTGTCAGAGGCTTCTGTGCTACAGCGGGAGCTATCTTCCCTCCTCCTCAAGGGGGCAATAGAAGAAGTTCCTCCAGTGGAAGTGGAACGCGGCTTTTTCAGCCGCTACTTTCTAGTTCTGAAGAAGGACGGCGGTCTGCGCCCTATACTAGACCTCCATTGTCTGAACTTCTCCCTTTACAAAGGGAAGTTCAGAATGTTGACGCTGAAGACTATCATGTCTCAAATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU57944 lncRNA upstream 9568 757122 ~ 760273 (+) False G50917
TU57945 lncRNA upstream 12108 757122 ~ 757733 (+) True G50917
TU57939 lncRNA upstream 13670 746194 ~ 756171 (+) True G50913
TU57933 lncRNA upstream 24663 742001 ~ 745178 (+) True G50911
TU57931 lncRNA upstream 33816 735727 ~ 736025 (+) True G50909
TU57949 lncRNA downstream 6051 776284 ~ 776509 (+) True G50921
TU58043 lncRNA downstream 16651 786884 ~ 787490 (+) True G50973
TU58048 lncRNA downstream 29394 799627 ~ 799859 (+) True G50978
TU58056 lncRNA downstream 67707 837940 ~ 840919 (+) True G50984
TU58017 lncRNA downstream 103869 874102 ~ 877421 (+) True G50947
CI01000009_00719164_00724772.mRNA mRNA upstream 44790 719164 ~ 725051 (+) True CI01000009_00719164_00724772
CI01000009_00704243_00710805.mRNA mRNA upstream 59036 704065 ~ 710805 (+) True CI01000009_00704243_00710805
CI01000009_00620687_00621072.mRNA mRNA upstream 148304 620687 ~ 621537 (+) True CI01000009_00620687_00621072
CI01000009_00611583_00617762.mRNA mRNA upstream 152079 611305 ~ 617762 (+) True CI01000009_00611583_00617762
CI01000009_00608513_00609159.mRNA mRNA upstream 160466 608513 ~ 609375 (+) True CI01000009_00608513_00609159
CI01000009_00805606_00808374.mRNA mRNA downstream 34671 804904 ~ 808404 (+) True CI01000009_00805606_00808374
CI01000009_00852319_00853083.mRNA mRNA downstream 81009 851242 ~ 853461 (+) True CI01000009_00852319_00853083
CI01000009_00913995_00916434.mRNA mRNA downstream 143762 913995 ~ 916565 (+) True CI01000009_00913995_00916434
CI01000009_00920570_00955979.mRNA mRNA downstream 150195 920428 ~ 956574 (+) True CI01000009_00920570_00955979
CI01000009_01034561_01035452.mRNA mRNA downstream 264328 1034561 ~ 1035728 (+) True CI01000009_01034561_01035452
TU57430 other upstream 674054 94202 ~ 94283 (+) True G50472
TU57959 other downstream 652614 1422847 ~ 1438355 (+) True G50926
TU58233 other downstream 909913 1680146 ~ 1681966 (+) True G51122
TU58306 other downstream 1124002 1894235 ~ 1894364 (+) True G51182
TU58428 other downstream 1484866 2255099 ~ 2350486 (+) True G51274
TU58708 other downstream 2291800 3062033 ~ 3062587 (+) True G51529

Expression Profile