Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU57993 |
| length | 3488 |
| lncRNA type | antisense_over |
| GC content | 0.38 |
| exon number | 2 |
| gene id | G50933 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 905332 ~ 908981 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU58074 | lncRNA | upstream | 10461 | 894655 ~ 894871 (+) | True | G51001 |
| TU58024 | lncRNA | upstream | 24011 | 878271 ~ 881321 (+) | True | G50954 |
| TU58017 | lncRNA | upstream | 27911 | 874102 ~ 877421 (+) | True | G50947 |
| TU58056 | lncRNA | upstream | 64413 | 837940 ~ 840919 (+) | True | G50984 |
| TU58048 | lncRNA | upstream | 105473 | 799627 ~ 799859 (+) | True | G50978 |
| TU58090 | lncRNA | downstream | 64730 | 973711 ~ 973959 (+) | True | G51017 |
| TU58101 | lncRNA | downstream | 87063 | 996044 ~ 996272 (+) | True | G51028 |
| TU58104 | lncRNA | downstream | 92015 | 1000996 ~ 1001222 (+) | True | G51031 |
| TU58021 | lncRNA | downstream | 194297 | 1103278 ~ 1104484 (+) | True | G50951 |
| TU58042 | lncRNA | downstream | 195647 | 1104628 ~ 1105292 (+) | True | G50972 |
| CI01000009_00852319_00853083.mRNA | mRNA | upstream | 51871 | 851242 ~ 853461 (+) | True | CI01000009_00852319_00853083 |
| CI01000009_00805606_00808374.mRNA | mRNA | upstream | 96928 | 804904 ~ 808404 (+) | True | CI01000009_00805606_00808374 |
| CI01000009_00719164_00724772.mRNA | mRNA | upstream | 180281 | 719164 ~ 725051 (+) | True | CI01000009_00719164_00724772 |
| CI01000009_00704243_00710805.mRNA | mRNA | upstream | 194527 | 704065 ~ 710805 (+) | True | CI01000009_00704243_00710805 |
| CI01000009_00620687_00621072.mRNA | mRNA | upstream | 283795 | 620687 ~ 621537 (+) | True | CI01000009_00620687_00621072 |
| CI01000009_00913995_00916434.mRNA | mRNA | downstream | 5014 | 913995 ~ 916565 (+) | True | CI01000009_00913995_00916434 |
| CI01000009_00920570_00955979.mRNA | mRNA | downstream | 11447 | 920428 ~ 956574 (+) | True | CI01000009_00920570_00955979 |
| CI01000009_01034561_01035452.mRNA | mRNA | downstream | 125580 | 1034561 ~ 1035728 (+) | True | CI01000009_01034561_01035452 |
| CI01000009_01110684_01111118.mRNA | mRNA | downstream | 201703 | 1110684 ~ 1111601 (+) | True | CI01000009_01110684_01111118 |
| CI01000009_01183737_01206031.mRNA | mRNA | downstream | 273110 | 1182091 ~ 1206857 (+) | True | CI01000009_01183737_01206031 |
| TU57948 | other | upstream | 135099 | 769841 ~ 770233 (+) | True | G50920 |
| TU57430 | other | upstream | 809545 | 94202 ~ 94283 (+) | True | G50472 |
| TU57959 | other | downstream | 513866 | 1422847 ~ 1438355 (+) | True | G50926 |
| TU58233 | other | downstream | 771165 | 1680146 ~ 1681966 (+) | True | G51122 |
| TU58306 | other | downstream | 985254 | 1894235 ~ 1894364 (+) | True | G51182 |
| TU58428 | other | downstream | 1346118 | 2255099 ~ 2350486 (+) | True | G51274 |
| TU58708 | other | downstream | 2153052 | 3062033 ~ 3062587 (+) | True | G51529 |
