RNA id: TU58042


Basic Information

Item Value
RNA id TU58042
length 665
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G50972
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1104628 ~ 1105292 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATATTAAATTAAACAAATATACTTTATTTAATCTCACTTTATTAACCAATGTCTTTGATCCAATTCAACCATACTAATAAGCAAAAATGACTTTAGATAAACATCACATCTGTGATCAGCCTGAAGCTTATTCATTTCACTTTTGGTGTGAAAGGGCCTTTTCATTTGCCAAAAATAGAACTTGTTAATTGTAATTAAAAAACAAACAAGCAAGCCCAGCCCAGGTGAAACGTAATGCAAAAGTAATATAATGCATTACTTTCCATAAAAAGTAACTAAGTAATGTAATTAGTTACTTTTTTAGAGAGTAACGCAATATTTGTTAATAACAACAAAAAAAAGTTCTATTTTTTTGGTAAAATTTAAGGCCCTTTCACACCAAAAGTGAAATGAATAAGCCTCAGGCGGAAGGAAATGCATATTTACACCTGTACAATAGAGGGCGCAGCTCAAACAAACCTTTCAGCTGTGCTGCCATTCTGGACTGAAGAAGAATAGGATACACACTAGGAAGTTCAACACTCTTATTTCTAAATCTAATATAAAGTAATTTTTGCTTATTAGTATGGTTGAATTAGATCATTGAAGGTCAGCAGGAAAGACGTTGGTTAATAAAAAGTGAGATTAAATACATAAAGTATATTTGTGTAATTTAATATAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58021 lncRNA upstream 144 1103278 ~ 1104484 (+) True G50951
TU58104 lncRNA upstream 103406 1000996 ~ 1001222 (+) True G51031
TU58101 lncRNA upstream 108356 996044 ~ 996272 (+) True G51028
TU58090 lncRNA upstream 130669 973711 ~ 973959 (+) True G51017
TU57993 lncRNA upstream 195647 905332 ~ 908981 (+) True G50933
TU58031 lncRNA downstream 106258 1211550 ~ 1217229 (+) True G50961
TU58109 lncRNA downstream 179568 1284860 ~ 1285420 (+) True G51036
TU58112 lncRNA downstream 182908 1288200 ~ 1288672 (+) True G51039
TU58114 lncRNA downstream 185251 1290543 ~ 1290776 (+) True G51041
TU58116 lncRNA downstream 198307 1303599 ~ 1304068 (+) True G51043
CI01000009_01034561_01035452.mRNA mRNA upstream 68900 1034561 ~ 1035728 (+) True CI01000009_01034561_01035452
CI01000009_00920570_00955979.mRNA mRNA upstream 148054 920428 ~ 956574 (+) True CI01000009_00920570_00955979
CI01000009_00913995_00916434.mRNA mRNA upstream 188063 913995 ~ 916565 (+) True CI01000009_00913995_00916434
CI01000009_00852319_00853083.mRNA mRNA upstream 251167 851242 ~ 853461 (+) True CI01000009_00852319_00853083
CI01000009_00805606_00808374.mRNA mRNA upstream 296224 804904 ~ 808404 (+) True CI01000009_00805606_00808374
CI01000009_01110684_01111118.mRNA mRNA downstream 5392 1110684 ~ 1111601 (+) True CI01000009_01110684_01111118
CI01000009_01183737_01206031.mRNA mRNA downstream 76799 1182091 ~ 1206857 (+) True CI01000009_01183737_01206031
CI01000009_01219880_01224537.mRNA mRNA downstream 114345 1219637 ~ 1224869 (+) True CI01000009_01219880_01224537
CI01000009_01351236_01380055.mRNA mRNA downstream 245944 1351236 ~ 1380285 (+) True CI01000009_01351236_01380055
CI01000009_01402330_01407372.mRNA mRNA downstream 295769 1401061 ~ 1407755 (+) True CI01000009_01402330_01407372
TU57948 other upstream 334395 769841 ~ 770233 (+) True G50920
TU57430 other upstream 1008841 94202 ~ 94283 (+) True G50472
TU57959 other downstream 317555 1422847 ~ 1438355 (+) True G50926
TU58233 other downstream 574854 1680146 ~ 1681966 (+) True G51122
TU58306 other downstream 788943 1894235 ~ 1894364 (+) True G51182
TU58428 other downstream 1149807 2255099 ~ 2350486 (+) True G51274
TU58708 other downstream 1956741 3062033 ~ 3062587 (+) True G51529

Expression Profile