RNA id: TU59343


Basic Information

Item Value
RNA id TU59343
length 357
lncRNA type inter_gene
GC content 0.63
exon number 1
gene id G52086
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1239101 ~ 1239457 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGAGTCTTTGATACCTTTTTACTTTATGAACTGTGCTGAATGTCAAATGAGGGTGAGTAATTATGTCTGACCACCAAAATCTCAGACATAACGAATATTATGTTTTAGGATGCCTCTGAAATAGGCATTATGCTGCATCCCAGACATGCGAGGGAAATAACTGTCTAAAATAAAATAAAAGAATCAACAAACCCAGAACTTATAACTGGTTTTCAGATAAAAGTGGGCAATGTGTTCAAATGTTATTAGCGCTTTCTTTTTTATTACCTGAAGTAATAAGAATTATTCATGCTAGTTAGTGTATTAATTTGTTCATTAAAGGATTAGTTCGCTTTCAAATGAAAATTAGCCCAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59342 lncRNA downstream 1840 1237006 ~ 1237261 (-) True G52085
TU59341 lncRNA downstream 2316 1236562 ~ 1236785 (-) True G52084
TU59340 lncRNA downstream 3489 1234956 ~ 1235612 (-) True G52083
TU59339 lncRNA downstream 4361 1234052 ~ 1234740 (-) True G52082
TU59208 lncRNA downstream 5823 1231128 ~ 1233278 (-) True G51957
TU59344 lncRNA upstream 24 1239481 ~ 1240238 (-) True G52087
TU59345 lncRNA upstream 798 1240255 ~ 1240786 (-) True G52088
TU59346 lncRNA upstream 1804 1241261 ~ 1241607 (-) True G52089
TU59348 lncRNA upstream 3287 1242744 ~ 1244244 (-) True G52091
TU59351 lncRNA upstream 26721 1266178 ~ 1266612 (-) True G52094
CI01000009_01208525_01212914.mRNA mRNA downstream 24584 1208374 ~ 1214517 (-) True CI01000009_01208525_01212914
CI01000009_01138569_01164523.mRNA mRNA downstream 74564 1138249 ~ 1164537 (-) True CI01000009_01138569_01164523
CI01000009_01128947_01131135.mRNA mRNA downstream 107940 1128884 ~ 1131161 (-) True CI01000009_01128947_01131135
CI01000009_01121956_01122628.mRNA mRNA downstream 113314 1121187 ~ 1125787 (-) True CI01000009_01121956_01122628
CI01000009_01112860_01113252.mRNA mRNA downstream 125849 1112612 ~ 1113252 (-) True CI01000009_01112860_01113252
CI01000009_01257207_01258196.mRNA mRNA upstream 17020 1256477 ~ 1258196 (-) True CI01000009_01257207_01258196
CI01000009_01264011_01272894.mRNA mRNA upstream 24150 1263607 ~ 1273340 (-) True CI01000009_01264011_01272894
CI01000009_01293719_01294750.mRNA mRNA upstream 53259 1292716 ~ 1294963 (-) True CI01000009_01293719_01294750
CI01000009_01327537_01337349.mRNA mRNA upstream 87855 1327312 ~ 1337846 (-) True CI01000009_01327537_01337349
CI01000009_01386589_01389680.mRNA mRNA upstream 146920 1386377 ~ 1390149 (-) False CI01000009_01386589_01389680
TU59360 other upstream 162475 1401932 ~ 1407627 (-) True G52098
TU59629 other upstream 998066 2240693 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59633 other upstream 998066 2237523 ~ 2238392 (-) False CI01000009_02237301_02238365
TU59634 other upstream 998066 2240019 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59630 other upstream 998281 2240693 ~ 2240764 (-) True CI01000009_02239426_02240738

Expression Profile