RNA id: TU59348



Basic Information


Item Value
RNA id TU59348
length 1501
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G52091
representative True

Chromosome Information


Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1242744 ~ 1244244 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTTAAACCTGGAATTAAACCCGCCAGTAGGTGGCAGCAAGTCCCTGCTAATGAGCGAGTCATTGAGATTCAACCGGATTCATTCAGGAAGTGTTGCTCAGAGACGCAAAACAATTCTGTGGACTTTGTTTGGAACTATTTTCGTTGGCGAAATAGAGTGAAACAGGCGATTTGGTGTCTAAAATGTAAGTCACTTGATATTAAGTTCTTTATCTGTTCATATCTGTTCATTAAACTCTACGCTGTATAAAATCAATATCACATTTGTAATTGCTGATATTTGGAGAAAAACGGCGCTGTGTAATATTGGTTAACTACATTAAATTATATAAATATAAAAAATATCCTGGGGCCCCTTATCTAAATGTATTTTAATAGACTAAATCATGCAGTGAAAGCGTACGCTCTAAATATGCACGCGCACTAGTCTAACCTACTAGACTACGTCACGTATTGCATGCGTGCACTCAATGGGTGTGTTTTTGTAAAGTGAGGGACATACTCGATAATTTCAGATCGTTAAATCAACAATTACGATATCATAGACATAGATGATATATATCGCACACCCTACAGCACTGGCCCGATCGGGCAAGTGACCGTTCCGTCTACTGTCCCGAGCGTCGTTCACCCTGGCCCCGGGCCATCGGGCAGTCCTTATTGTCGAGCCCTGACATGTGTCATAAACAAACTCTAAACAAGTACATGAACGCTACACATTTCCGGGGTTGTGGCATAAATGATTTCTGGGGTTGTGGCATTGTTCAGGCATTATCTGCATCTTCTTCTACAGTCAGAATCTTATGAGTTTTATGTTCCCTCAGTTATTTTTCTTTTCTCTTTTACTATGAATGATTTCAGCCAGAGAGTCTGTAAAATGTAAATGTGAACAATTTAACATGTATACGTTAGTAATAAAATGTATAAAATGATTATACAAACAAAAAAAGTTCATGAAGACTGCCACTAGGGGTCAAAGTGCAGCAATTGTATTCACAGGCCACAGTGAAAATGAGACTTGAGACATTGCTGCTCCAGAAATCTGCCTTTTTCTTAGTGCAAGTGCACAAAAAATAATAAATAAATAAATTAAATAAAAATGTACCTGTTAGAAATATTGTCAAATCCGCATTATAAACTTTATTAGTCTGGCTCATGAATATAAATTGTTTGATAATGTGTTTACTAAGTAGTTCTAAATGGTTTGTCAAAAAGCAGGAGCTACTGTAGTCATGTAAGTTATTAGTCCTAAAGTCATTATAGGTGGCTGGCACTGCAAAACAAAGCTGTTAAAATTTGGGGGTGTGAACTTAAAAATTTCTAAGAGTGGAGAAATCATGTTGCTATTCTAAAACTACAGAGAACTGCAGCCAGAAATGCACATTTAATGCAAACCAACAGTAACTACATATCATATATTATTACTAGACAAAGGGTATGTGGGCTACAAGTGGGGGACTGGCCTTCCCCTGCAACACCTACCCCACCGGCCTCAAGGTTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU59346 lncRNA downstream 1137 1241261 ~ 1241607 (-) True G52089
TU59345 lncRNA downstream 1958 1240255 ~ 1240786 (-) True G52088
TU59344 lncRNA downstream 2506 1239481 ~ 1240238 (-) True G52087
TU59343 lncRNA downstream 3287 1239101 ~ 1239457 (-) True G52086
TU59342 lncRNA downstream 5483 1237006 ~ 1237261 (-) True G52085
TU59351 lncRNA upstream 21934 1266178 ~ 1266612 (-) True G52094
TU59197 lncRNA upstream 23707 1267951 ~ 1270025 (-) True G51951
TU59353 lncRNA upstream 39299 1283543 ~ 1283907 (-) True G52096
TU59365 lncRNA upstream 61025 1305269 ~ 1315480 (-) True G52102
TU59363 lncRNA upstream 139620 1390969 ~ 1391087 (-) True G52100
CI01000009_01208525_01212914.mRNA mRNA downstream 28227 1208374 ~ 1214517 (-) True CI01000009_01208525_01212914
CI01000009_01138569_01164523.mRNA mRNA downstream 78207 1138249 ~ 1164537 (-) True CI01000009_01138569_01164523
CI01000009_01128947_01131135.mRNA mRNA downstream 111583 1128884 ~ 1131161 (-) True CI01000009_01128947_01131135
CI01000009_01121956_01122628.mRNA mRNA downstream 116957 1121187 ~ 1125787 (-) True CI01000009_01121956_01122628
CI01000009_01112860_01113252.mRNA mRNA downstream 129492 1112612 ~ 1113252 (-) True CI01000009_01112860_01113252
CI01000009_01257207_01258196.mRNA mRNA upstream 12233 1256477 ~ 1258196 (-) True CI01000009_01257207_01258196
CI01000009_01264011_01272894.mRNA mRNA upstream 19363 1263607 ~ 1273340 (-) True CI01000009_01264011_01272894
CI01000009_01293719_01294750.mRNA mRNA upstream 48472 1292716 ~ 1294963 (-) True CI01000009_01293719_01294750
CI01000009_01327537_01337349.mRNA mRNA upstream 83068 1327312 ~ 1337846 (-) True CI01000009_01327537_01337349
CI01000009_01386589_01389680.mRNA mRNA upstream 142133 1386377 ~ 1390149 (-) False CI01000009_01386589_01389680
TU59360 other upstream 157688 1401932 ~ 1407627 (-) True G52098
TU59629 other upstream 993279 2240693 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59633 other upstream 993279 2237523 ~ 2238392 (-) False CI01000009_02237301_02238365
TU59634 other upstream 993279 2240019 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59630 other upstream 993494 2240693 ~ 2240764 (-) True CI01000009_02239426_02240738

Expression Profile