RNA id: TU59351


Basic Information

Item Value
RNA id TU59351
length 435
lncRNA type intronic
GC content 0.38
exon number 1
gene id G52094
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1266178 ~ 1266612 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGGACGTCAAAAGGTAGAATGACATTGCTGCCTATGTGTGGATCAGATATCCTCGGATTTCATCAAAAATATCTTAATTTGTGTTCCGAAGATGAACGAAGGTCTTACAGGTGTGGAACGACATGAGGGTGAATAATTAATGACAGAAATTTCATTTTTGGGTGAACTAACCCTTTAATTGTAAAAGGGTTAGTTCTGATTACTCAATTACCAAAATAATTGTCAATGGCAGCACTAGATTAGTTAAAATATTTAAAATTGCACCTGCATTGTTTTCCATTTTGTGACTTTCAGTCAAAGAAAATAAATATTTTTCCAGTCATATATTTTGTCATTGAAGGTTTCTTAATAATGGTGTCTTATTCTTGTGAACCCAATATTGTGTCTCTCGTGAGCTAATTATATATTGTCACACCCCTACTGTTTACCCATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59348 lncRNA downstream 21934 1242744 ~ 1244244 (-) True G52091
TU59346 lncRNA downstream 24571 1241261 ~ 1241607 (-) True G52089
TU59345 lncRNA downstream 25392 1240255 ~ 1240786 (-) True G52088
TU59344 lncRNA downstream 25940 1239481 ~ 1240238 (-) True G52087
TU59343 lncRNA downstream 26721 1239101 ~ 1239457 (-) True G52086
TU59197 lncRNA upstream 1339 1267951 ~ 1270025 (-) True G51951
TU59353 lncRNA upstream 16931 1283543 ~ 1283907 (-) True G52096
TU59365 lncRNA upstream 38657 1305269 ~ 1315480 (-) True G52102
TU59363 lncRNA upstream 117252 1390969 ~ 1391087 (-) True G52100
TU59425 lncRNA upstream 159462 1426074 ~ 1431565 (-) True G52160
CI01000009_01257207_01258196.mRNA mRNA downstream 7982 1256477 ~ 1258196 (-) True CI01000009_01257207_01258196
CI01000009_01208525_01212914.mRNA mRNA downstream 51661 1208374 ~ 1214517 (-) True CI01000009_01208525_01212914
CI01000009_01138569_01164523.mRNA mRNA downstream 101641 1138249 ~ 1164537 (-) True CI01000009_01138569_01164523
CI01000009_01128947_01131135.mRNA mRNA downstream 135017 1128884 ~ 1131161 (-) True CI01000009_01128947_01131135
CI01000009_01121956_01122628.mRNA mRNA downstream 140391 1121187 ~ 1125787 (-) True CI01000009_01121956_01122628
CI01000009_01293719_01294750.mRNA mRNA upstream 26104 1292716 ~ 1294963 (-) True CI01000009_01293719_01294750
CI01000009_01327537_01337349.mRNA mRNA upstream 60700 1327312 ~ 1337846 (-) True CI01000009_01327537_01337349
CI01000009_01386589_01389680.mRNA mRNA upstream 119765 1386377 ~ 1390149 (-) False CI01000009_01386589_01389680
CI01000009_01394603_01397604.mRNA mRNA upstream 127946 1394558 ~ 1398473 (-) True CI01000009_01394603_01397604
CI01000009_01423940_01424233.mRNA mRNA upstream 157099 1423711 ~ 1424573 (-) True CI01000009_01423940_01424233
TU59360 other upstream 135320 1401932 ~ 1407627 (-) True G52098
TU59629 other upstream 970911 2240693 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59633 other upstream 970911 2237523 ~ 2238392 (-) False CI01000009_02237301_02238365
TU59634 other upstream 970911 2240019 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59630 other upstream 971126 2240693 ~ 2240764 (-) True CI01000009_02239426_02240738

Expression Profile