RNA id: TU59353


Basic Information

Item Value
RNA id TU59353
length 365
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G52096
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1283543 ~ 1283907 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCGCAAAGACGACCGCATGCTCGAATTTCCCGTGGAAACCCACCAGTACTGCTATTATTAATAACTTTACCACTCTTATTGATAACTTACCGCTCTTATTAAACATTATTACAAGCTTACTGCTGTGAATTGGGCTAAGGTAAGGAGATAGTTTTGAACACTGGCTGGTTATTGGCTTGCTCAAAAAATTTTTTTGGATCATTTTTAACCAAAAAAAGTTATGGACTGCAGCTTTAAATTATTCAAATGTATTTGTGAATTGCTTTTTACAATACATTTTGTTCGAAAGCAGCTTCAAAACAGAGCTTTAAAAAAACAACTCAAGTTATTATCCTCTAAGAAGAAACCAAATGGAGGAACCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59197 lncRNA downstream 13518 1267951 ~ 1270025 (-) True G51951
TU59351 lncRNA downstream 16931 1266178 ~ 1266612 (-) True G52094
TU59348 lncRNA downstream 39299 1242744 ~ 1244244 (-) True G52091
TU59346 lncRNA downstream 41936 1241261 ~ 1241607 (-) True G52089
TU59345 lncRNA downstream 42757 1240255 ~ 1240786 (-) True G52088
TU59365 lncRNA upstream 21362 1305269 ~ 1315480 (-) True G52102
TU59363 lncRNA upstream 99957 1390969 ~ 1391087 (-) True G52100
TU59425 lncRNA upstream 142167 1426074 ~ 1431565 (-) True G52160
TU59420 lncRNA upstream 162587 1446494 ~ 1450926 (-) False G52157
TU59421 lncRNA upstream 162587 1446494 ~ 1450926 (-) True G52157
CI01000009_01264011_01272894.mRNA mRNA downstream 10203 1263607 ~ 1273340 (-) True CI01000009_01264011_01272894
CI01000009_01257207_01258196.mRNA mRNA downstream 25347 1256477 ~ 1258196 (-) True CI01000009_01257207_01258196
CI01000009_01208525_01212914.mRNA mRNA downstream 69026 1208374 ~ 1214517 (-) True CI01000009_01208525_01212914
CI01000009_01138569_01164523.mRNA mRNA downstream 119006 1138249 ~ 1164537 (-) True CI01000009_01138569_01164523
CI01000009_01128947_01131135.mRNA mRNA downstream 152382 1128884 ~ 1131161 (-) True CI01000009_01128947_01131135
CI01000009_01293719_01294750.mRNA mRNA upstream 8809 1292716 ~ 1294963 (-) True CI01000009_01293719_01294750
CI01000009_01327537_01337349.mRNA mRNA upstream 43405 1327312 ~ 1337846 (-) True CI01000009_01327537_01337349
CI01000009_01386589_01389680.mRNA mRNA upstream 102470 1386377 ~ 1390149 (-) False CI01000009_01386589_01389680
CI01000009_01394603_01397604.mRNA mRNA upstream 110651 1394558 ~ 1398473 (-) True CI01000009_01394603_01397604
CI01000009_01423940_01424233.mRNA mRNA upstream 139804 1423711 ~ 1424573 (-) True CI01000009_01423940_01424233
TU59360 other upstream 118025 1401932 ~ 1407627 (-) True G52098
TU59629 other upstream 953616 2240693 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59633 other upstream 953616 2237523 ~ 2238392 (-) False CI01000009_02237301_02238365
TU59634 other upstream 953616 2240019 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59630 other upstream 953831 2240693 ~ 2240764 (-) True CI01000009_02239426_02240738

Expression Profile