Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU59365 |
| length | 1288 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 3 |
| gene id | G52102 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 1305269 ~ 1315480 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU59353 | lncRNA | downstream | 21362 | 1283543 ~ 1283907 (-) | True | G52096 |
| TU59197 | lncRNA | downstream | 35244 | 1267951 ~ 1270025 (-) | True | G51951 |
| TU59351 | lncRNA | downstream | 38657 | 1266178 ~ 1266612 (-) | True | G52094 |
| TU59348 | lncRNA | downstream | 61025 | 1242744 ~ 1244244 (-) | True | G52091 |
| TU59346 | lncRNA | downstream | 63662 | 1241261 ~ 1241607 (-) | True | G52089 |
| TU59363 | lncRNA | upstream | 68384 | 1390969 ~ 1391087 (-) | True | G52100 |
| TU59425 | lncRNA | upstream | 110594 | 1426074 ~ 1431565 (-) | True | G52160 |
| TU59420 | lncRNA | upstream | 131014 | 1446494 ~ 1450926 (-) | False | G52157 |
| TU59421 | lncRNA | upstream | 131014 | 1446494 ~ 1450926 (-) | True | G52157 |
| TU59517 | lncRNA | upstream | 373592 | 1689072 ~ 1703392 (-) | True | G52244 |
| CI01000009_01293719_01294750.mRNA | mRNA | downstream | 10306 | 1292716 ~ 1294963 (-) | True | CI01000009_01293719_01294750 |
| CI01000009_01264011_01272894.mRNA | mRNA | downstream | 31929 | 1263607 ~ 1273340 (-) | True | CI01000009_01264011_01272894 |
| CI01000009_01257207_01258196.mRNA | mRNA | downstream | 47073 | 1256477 ~ 1258196 (-) | True | CI01000009_01257207_01258196 |
| CI01000009_01208525_01212914.mRNA | mRNA | downstream | 90752 | 1208374 ~ 1214517 (-) | True | CI01000009_01208525_01212914 |
| CI01000009_01138569_01164523.mRNA | mRNA | downstream | 140732 | 1138249 ~ 1164537 (-) | True | CI01000009_01138569_01164523 |
| CI01000009_01327537_01337349.mRNA | mRNA | upstream | 11832 | 1327312 ~ 1337846 (-) | True | CI01000009_01327537_01337349 |
| CI01000009_01386589_01389680.mRNA | mRNA | upstream | 70897 | 1386377 ~ 1390149 (-) | False | CI01000009_01386589_01389680 |
| CI01000009_01394603_01397604.mRNA | mRNA | upstream | 79078 | 1394558 ~ 1398473 (-) | True | CI01000009_01394603_01397604 |
| CI01000009_01423940_01424233.mRNA | mRNA | upstream | 108231 | 1423711 ~ 1424573 (-) | True | CI01000009_01423940_01424233 |
| CI01000009_01541031_01546978.mRNA | mRNA | upstream | 225414 | 1540894 ~ 1547804 (-) | True | CI01000009_01541031_01546978 |
| TU59360 | other | upstream | 86452 | 1401932 ~ 1407627 (-) | True | G52098 |
| TU59629 | other | upstream | 922043 | 2240693 ~ 2240764 (-) | False | CI01000009_02239426_02240738 |
| TU59633 | other | upstream | 922043 | 2237523 ~ 2238392 (-) | False | CI01000009_02237301_02238365 |
| TU59634 | other | upstream | 922043 | 2240019 ~ 2240764 (-) | False | CI01000009_02239426_02240738 |
| TU59630 | other | upstream | 922258 | 2240693 ~ 2240764 (-) | True | CI01000009_02239426_02240738 |
