RNA id: TU59549


Basic Information

Item Value
RNA id TU59549
length 546
lncRNA type intronic
GC content 0.38
exon number 2
gene id G52274
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1974202 ~ 1975828 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCAAAAGTTTGTGAACCATTGATTCTTAATACTGTGTGTGGTTACCTGGATGATCTACGACTGTTTTTTTTGTTGTGTGATGGTTGTTCATGAGTCCCTTGTTTGTTCTGAGCAGTTAAACTGAGCTCTGTTCTTCAGAAAAAAATCTCCAGGTCCTGCAGATTCTTCAGATTTCAAGCATTTTTTGCATATTTGAACCCTTTCCAGCAGTGACTATGATTTTGAGATCCATCTTTTCACACTGAGGACAACTGAGGGACTCAAACACAACTAATAAAAAAGGTTCAAACATTCACTGATGCTCCAGAAGGAAACACGATGAATTAAGAGCCGGGGGGTGAAAACTTTTTGAATTTGAAGATCAAGGTAAATTGTACTTAATTTGTCTCCGGGAAACATGTAAGTATCTTCTGTTGCTTCCGAAGGGCAGTACTAAATGAAGAAAATTGATAGTTAAACAAAATAAGAAAAATTTGGACATCTTCATCCTGTTCAAAAGTTTTCACCCCCCGACTTTTAACACATCGTGTTTCCTTCTGGAGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59541 lncRNA downstream 80914 1892979 ~ 1893288 (-) True G52267
TU59517 lncRNA downstream 270810 1689072 ~ 1703392 (-) True G52244
TU59420 lncRNA downstream 523276 1446494 ~ 1450926 (-) False G52157
TU59421 lncRNA downstream 523276 1446494 ~ 1450926 (-) True G52157
TU59425 lncRNA downstream 542637 1426074 ~ 1431565 (-) True G52160
TU59493 lncRNA upstream 14793 1990621 ~ 1991986 (-) True G52222
TU59501 lncRNA upstream 118540 2094368 ~ 2096052 (-) True G52230
TU59622 lncRNA upstream 181584 2157412 ~ 2157746 (-) True G52338
TU59626 lncRNA upstream 239124 2214952 ~ 2215535 (-) True G52342
TU59660 lncRNA upstream 412486 2388314 ~ 2388539 (-) True G52371
CI01000009_01954952_01964842.mRNA mRNA downstream 8965 1954559 ~ 1965237 (-) True CI01000009_01954952_01964842
CI01000009_01925054_01944771.mRNA mRNA downstream 29431 1924935 ~ 1944771 (-) True CI01000009_01925054_01944771
CI01000009_01743393_01795392.mRNA mRNA downstream 178741 1743118 ~ 1795461 (-) True CI01000009_01743393_01795392
CI01000009_01596212_01681960.mRNA mRNA downstream 292175 1595701 ~ 1682027 (-) True CI01000009_01596212_01681960
CI01000009_01550846_01564109.mRNA mRNA downstream 409034 1550784 ~ 1565168 (-) True CI01000009_01550846_01564109
CI01000009_01981245_01988092.mRNA mRNA upstream 4868 1980696 ~ 1988092 (-) True CI01000009_01981245_01988092
CI01000009_02001400_02018841.mRNA mRNA upstream 24628 2000456 ~ 2020641 (-) True CI01000009_02001400_02018841
CI01000009_02167959_02200058.mRNA mRNA upstream 191535 2167363 ~ 2200058 (-) True CI01000009_02167959_02200058
CI01000009_02228671_02232977.mRNA mRNA upstream 251796 2227624 ~ 2232977 (-) True CI01000009_02228671_02232977
CI01000009_02237301_02238365.mRNA mRNA upstream 261473 2237301 ~ 2238872 (-) False CI01000009_02237301_02238365
TU59360 other downstream 566575 1401932 ~ 1407627 (-) True G52098
TU59629 other upstream 261695 2240693 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59633 other upstream 261695 2237523 ~ 2238392 (-) False CI01000009_02237301_02238365
TU59634 other upstream 261695 2240019 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59630 other upstream 261910 2240693 ~ 2240764 (-) True CI01000009_02239426_02240738
TU59632 other upstream 263632 2239460 ~ 2240479 (-) False CI01000009_02239426_02240738

Expression Profile