RNA id: TU59622


Basic Information

Item Value
RNA id TU59622
length 335
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G52338
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2157412 ~ 2157746 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAACACAGGAATACTTTTATTCTGCGTTTCGCAAATTTAGATATCTGGCCTCACAAGCAAGGACATGGTGGGATACCTTAGTTTCTAAGTGGGATATTTAGATTTGGTTGGTTTATGGAGTCCGCACAGGAGATGCATTAGCAGGGGTCAGATATGTGTGGCAAAAAAAAAAAAAAAAAAAAAAAGCTATTTGTGGTAAAAAAAAAACAAAACAAAACAAAATAACAAGGGCTGCAGTGGGTTTGATTTGTCTGATTTAATCAGTATCCCCGTCAAGCACAATATTCAATATAAGAGGCCAAACAGCTGCTGCAATTAAAAATGTATAATGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59501 lncRNA downstream 61360 2094368 ~ 2096052 (-) True G52230
TU59493 lncRNA downstream 165426 1990621 ~ 1991986 (-) True G52222
TU59549 lncRNA downstream 181584 1974202 ~ 1975828 (-) True G52274
TU59548 lncRNA downstream 181873 1974202 ~ 1975539 (-) False G52274
TU59541 lncRNA downstream 264124 1892979 ~ 1893288 (-) True G52267
TU59626 lncRNA upstream 57206 2214952 ~ 2215535 (-) True G52342
TU59660 lncRNA upstream 230568 2388314 ~ 2388539 (-) True G52371
TU59610 lncRNA upstream 242068 2399814 ~ 2400894 (-) True G52328
TU59612 lncRNA upstream 243289 2401035 ~ 2401380 (-) True G52330
TU59668 lncRNA upstream 269503 2427249 ~ 2427848 (-) True G52378
CI01000009_02001400_02018841.mRNA mRNA downstream 136771 2000456 ~ 2020641 (-) True CI01000009_02001400_02018841
CI01000009_01981245_01988092.mRNA mRNA downstream 169320 1980696 ~ 1988092 (-) True CI01000009_01981245_01988092
CI01000009_01954952_01964842.mRNA mRNA downstream 192175 1954559 ~ 1965237 (-) True CI01000009_01954952_01964842
CI01000009_01925054_01944771.mRNA mRNA downstream 212641 1924935 ~ 1944771 (-) True CI01000009_01925054_01944771
CI01000009_01743393_01795392.mRNA mRNA downstream 361951 1743118 ~ 1795461 (-) True CI01000009_01743393_01795392
CI01000009_02167959_02200058.mRNA mRNA upstream 9617 2167363 ~ 2200058 (-) True CI01000009_02167959_02200058
CI01000009_02228671_02232977.mRNA mRNA upstream 69878 2227624 ~ 2232977 (-) True CI01000009_02228671_02232977
CI01000009_02237301_02238365.mRNA mRNA upstream 79555 2237301 ~ 2238872 (-) False CI01000009_02237301_02238365
CI01000009_02239426_02240738.mRNA mRNA upstream 81675 2239421 ~ 2240796 (-) False CI01000009_02239426_02240738
CI01000009_02247894_02249252.mRNA mRNA upstream 90028 2247774 ~ 2249286 (-) True CI01000009_02247894_02249252
TU59360 other downstream 749785 1401932 ~ 1407627 (-) True G52098
TU59629 other upstream 79777 2240693 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59633 other upstream 79777 2237523 ~ 2238392 (-) False CI01000009_02237301_02238365
TU59634 other upstream 79777 2240019 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59630 other upstream 79992 2240693 ~ 2240764 (-) True CI01000009_02239426_02240738
TU59632 other upstream 81714 2239460 ~ 2240479 (-) False CI01000009_02239426_02240738

Expression Profile