RNA id: TU59660


Basic Information

Item Value
RNA id TU59660
length 226
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G52371
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2388314 ~ 2388539 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAAACTTTAGAGGGGCAATAAAAAAATACCCCTCACAGGGAGAGATGTTTGTGTGTGTGTGTCTCAGAGAGAGAGAAGAAACAAGTGTTAACCATTACTGAAGATGTACAAATAAGGAAAAGCTCATTGAAGAATGTGTGACTTTTCACATTTAGAGCATGGGAGAAATATGGGCTACACACCAACTCAAAATGACAAAAAAAAAACATCTGAATTCTTTTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59626 lncRNA downstream 172779 2214952 ~ 2215535 (-) True G52342
TU59622 lncRNA downstream 230568 2157412 ~ 2157746 (-) True G52338
TU59501 lncRNA downstream 292262 2094368 ~ 2096052 (-) True G52230
TU59493 lncRNA downstream 396328 1990621 ~ 1991986 (-) True G52222
TU59549 lncRNA downstream 412486 1974202 ~ 1975828 (-) True G52274
TU59610 lncRNA upstream 11275 2399814 ~ 2400894 (-) True G52328
TU59612 lncRNA upstream 12496 2401035 ~ 2401380 (-) True G52330
TU59668 lncRNA upstream 38710 2427249 ~ 2427848 (-) True G52378
TU59670 lncRNA upstream 59827 2448366 ~ 2451640 (-) True G52379
TU59737 lncRNA upstream 124418 2512957 ~ 2513671 (-) True G52440
CI01000009_02358636_02361913.mRNA mRNA downstream 26365 2358470 ~ 2361949 (-) True CI01000009_02358636_02361913
CI01000009_02352214_02356619.mRNA mRNA downstream 31473 2352214 ~ 2356841 (-) True CI01000009_02352214_02356619
CI01000009_02327693_02335035.mRNA mRNA downstream 53279 2327693 ~ 2335035 (-) True CI01000009_02327693_02335035
CI01000009_02300395_02301213.mRNA mRNA downstream 86677 2300109 ~ 2301637 (-) True CI01000009_02300395_02301213
CI01000009_02286191_02288884.mRNA mRNA downstream 99333 2286160 ~ 2288981 (-) True CI01000009_02286191_02288884
CI01000009_02391182_02393863.mRNA mRNA upstream 1906 2390445 ~ 2393863 (-) True CI01000009_02391182_02393863
CI01000009_02403219_02417215.mRNA mRNA upstream 14617 2403156 ~ 2417215 (-) True CI01000009_02403219_02417215
CI01000009_02591882_02593586.mRNA mRNA upstream 203324 2591863 ~ 2593761 (-) True CI01000009_02591882_02593586
CI01000009_02610459_02610721.mRNA mRNA upstream 221721 2610260 ~ 2610721 (-) True CI01000009_02610459_02610721
CI01000009_02654102_02655554.mRNA mRNA upstream 265563 2654102 ~ 2656438 (-) True CI01000009_02654102_02655554
TU59629 other downstream 147550 2240693 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59634 other downstream 147550 2240019 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59630 other downstream 147550 2240693 ~ 2240764 (-) True CI01000009_02239426_02240738
TU59631 other downstream 147550 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59632 other downstream 147835 2239460 ~ 2240479 (-) False CI01000009_02239426_02240738
TU59706 other upstream 163185 2551724 ~ 2562533 (-) True G52410
TU59711 other upstream 495149 2899254 ~ 2899407 (-) True G52415
TU59814 other upstream 872664 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU60172 other upstream 1828881 4217420 ~ 4231469 (-) True G52828
TU60944 other upstream 3113856 5502395 ~ 5505248 (-) False G53515

Expression Profile