RNA id: TU59612


Basic Information

Item Value
RNA id TU59612
length 346
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G52330
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2401035 ~ 2401380 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCGACGTGCCTGCAGTGGTTCAACCTTAATTTTATGAAGTGACGAGAATACTTTTTGTGCGCAAAAACAAAAAACAATAACGACTTTATTCAACAATATCTTCTCTTCTGTGTCATTCTCATATGTCTAGCACTTCCAGGTTCTACATCAGAACTCTGACTCATTATTGGCCGGCTCCTGCGTCAGCATCACACGCATGCATCGTGCTGCTCACGTGATCAACGTTGGCCAATACTGAGCCGGCATTCAGACGTAAACACGGAAGCGGAAGAGATTGTTGAATAAAGTTGTTATTTTTGTTTTGTTTTGTTTTGTCGCTTCATAACATTAAGGTTGAACCACTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59610 lncRNA downstream 141 2399814 ~ 2400894 (-) True G52328
TU59660 lncRNA downstream 12496 2388314 ~ 2388539 (-) True G52371
TU59626 lncRNA downstream 185500 2214952 ~ 2215535 (-) True G52342
TU59622 lncRNA downstream 243289 2157412 ~ 2157746 (-) True G52338
TU59501 lncRNA downstream 304983 2094368 ~ 2096052 (-) True G52230
TU59668 lncRNA upstream 25869 2427249 ~ 2427848 (-) True G52378
TU59670 lncRNA upstream 46986 2448366 ~ 2451640 (-) True G52379
TU59737 lncRNA upstream 111577 2512957 ~ 2513671 (-) True G52440
TU59705 lncRNA upstream 162382 2563762 ~ 2566564 (-) True G52409
TU59702 lncRNA upstream 173106 2574486 ~ 2578978 (-) True G52406
CI01000009_02391182_02393863.mRNA mRNA downstream 7172 2390445 ~ 2393863 (-) True CI01000009_02391182_02393863
CI01000009_02358636_02361913.mRNA mRNA downstream 39086 2358470 ~ 2361949 (-) True CI01000009_02358636_02361913
CI01000009_02352214_02356619.mRNA mRNA downstream 44194 2352214 ~ 2356841 (-) True CI01000009_02352214_02356619
CI01000009_02327693_02335035.mRNA mRNA downstream 66000 2327693 ~ 2335035 (-) True CI01000009_02327693_02335035
CI01000009_02300395_02301213.mRNA mRNA downstream 99398 2300109 ~ 2301637 (-) True CI01000009_02300395_02301213
CI01000009_02403219_02417215.mRNA mRNA upstream 1776 2403156 ~ 2417215 (-) True CI01000009_02403219_02417215
CI01000009_02591882_02593586.mRNA mRNA upstream 190483 2591863 ~ 2593761 (-) True CI01000009_02591882_02593586
CI01000009_02610459_02610721.mRNA mRNA upstream 208880 2610260 ~ 2610721 (-) True CI01000009_02610459_02610721
CI01000009_02654102_02655554.mRNA mRNA upstream 252722 2654102 ~ 2656438 (-) True CI01000009_02654102_02655554
CI01000009_02682050_02707583.mRNA mRNA upstream 280228 2681608 ~ 2707623 (-) True CI01000009_02682050_02707583
TU59634 other downstream 160271 2240019 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59630 other downstream 160271 2240693 ~ 2240764 (-) True CI01000009_02239426_02240738
TU59631 other downstream 160271 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59632 other downstream 160556 2239460 ~ 2240479 (-) False CI01000009_02239426_02240738
TU59633 other downstream 162643 2237523 ~ 2238392 (-) False CI01000009_02237301_02238365
TU59706 other upstream 150344 2551724 ~ 2562533 (-) True G52410
TU59711 other upstream 482308 2899254 ~ 2899407 (-) True G52415
TU59814 other upstream 859823 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU60172 other upstream 1816040 4217420 ~ 4231469 (-) True G52828
TU60944 other upstream 3101015 5502395 ~ 5505248 (-) False G53515

Expression Profile