RNA id: TU58515


Basic Information

Item Value
RNA id TU58515
length 538
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G51354
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2415700 ~ 2425283 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGACAGGTCTCGGGGTCGGCAGTGCATGGGCTGGATGGGGCTGCATGTCGACCGGTCCGAGTGCCTGGACCCCTTGGATTTAAACGACTCAACCAACTCATCTTAGCTCACAGGCTGATCCAAATTCAATAAAGAGGTCAACAGGGAAAGAATAAAGGGGGAGAGAGGGAGTAGTGTAGAGAGGGAGAGAAAAGGGAAAAAGGGGGGAGGGGGGGTAAGGTAACTCACAAAAGGTGTCCAAAAATCAAGAAATGAAGAGTCCAGCTTTATGAAATAAAGAGGTAAAAGCATAGAGAGGATGGAATCCTGCTGATGTCTGCAGCAACAGTCACTGTACACCAGTGATCAGTGTGTGAGCATGTGCGGCTTGTCTGCGCTCCCTGTCATCCAGTTTGCTATCGGCACTATACTCCATACCGATGCATAGACTCCTCCACACACACACGAGCGAGTGCTGTTTTCCGTTTCGTCTTCTGCCGTAACCTGTCTATCCTCAAACAGTGAATCTGAGATTTGTCAACCTCTCCCTTCGTCCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58426 lncRNA upstream 14333 2401033 ~ 2401367 (+) True G51272
TU58424 lncRNA upstream 14806 2399778 ~ 2400894 (+) True G51270
TU58522 lncRNA upstream 47286 2368182 ~ 2368414 (+) True G51358
TU58409 lncRNA upstream 52529 2357933 ~ 2363171 (+) True G51265
TU58418 lncRNA upstream 68788 2329539 ~ 2346912 (+) False G51265
TU58532 lncRNA downstream 2839 2428122 ~ 2428322 (+) True G51368
TU58551 lncRNA downstream 129456 2554739 ~ 2592079 (+) False G51384
TU58552 lncRNA downstream 129456 2554739 ~ 2592079 (+) False G51384
TU58549 lncRNA downstream 167567 2592850 ~ 2621187 (+) False G51384
TU58553 lncRNA downstream 167567 2592850 ~ 2594486 (+) True G51384
CI01000009_02398010_02399639.mRNA mRNA upstream 15948 2396065 ~ 2399752 (+) True CI01000009_02398010_02399639
CI01000009_02375481_02385887.mRNA mRNA upstream 29699 2375076 ~ 2386001 (+) True CI01000009_02375481_02385887
CI01000009_02284485_02285584.mRNA mRNA upstream 129571 2284485 ~ 2286129 (+) True CI01000009_02284485_02285584
CI01000009_02233367_02235148.mRNA mRNA upstream 179907 2233367 ~ 2235793 (+) True CI01000009_02233367_02235148
CI01000009_02028234_02100154.mRNA mRNA upstream 315546 2028234 ~ 2100154 (+) True CI01000009_02028234_02100154
CI01000009_02426085_02433745.mRNA mRNA downstream 292 2425575 ~ 2433795 (+) True CI01000009_02426085_02433745
CI01000009_02449805_02450173.mRNA mRNA downstream 22714 2447997 ~ 2450356 (+) True CI01000009_02449805_02450173
CI01000009_02479541_02488142.mRNA mRNA downstream 54258 2479541 ~ 2488759 (+) True CI01000009_02479541_02488142
CI01000009_02499173_02519062.mRNA mRNA downstream 73686 2498969 ~ 2519155 (+) True CI01000009_02499173_02519062
CI01000009_02572388_02587828.mRNA mRNA downstream 147105 2572388 ~ 2588051 (+) True CI01000009_02572388_02587828
TU58428 other upstream 65214 2255099 ~ 2350486 (+) True G51274
TU58306 other upstream 514274 1894235 ~ 1894364 (+) True G51182
TU58233 other upstream 733734 1680146 ~ 1681966 (+) True G51122
TU57959 other upstream 977345 1422847 ~ 1438355 (+) True G50926
TU57948 other upstream 1645467 769841 ~ 770233 (+) True G50920
TU58708 other downstream 636750 3062033 ~ 3062587 (+) True G51529
TU58745 other downstream 777489 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060
TU58746 other downstream 777489 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060
TU58749 other downstream 777489 3202772 ~ 3208306 (+) False CI01000009_03202999_03207060
TU58750 other downstream 777489 3202772 ~ 3207486 (+) False CI01000009_03202999_03207060

Expression Profile