RNA id: TU58532


Basic Information

Item Value
RNA id TU58532
length 201
lncRNA type intronic
GC content 0.33
exon number 1
gene id G51368
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2428122 ~ 2428322 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAACTAATCCATATGAATCGAGAGGTTTAGTCCAAATTTTCTGAAGAGAATCGATCACTTATTATGATGAACAGATTTAATTTAGGCTTTTACTCGCATGTAAACATTGATTAGCGAACATAAGCAAAAGCTCAACCTAACTTGAATAATGCACAAGAGCAAACTTCTTGTGGAAGCTCAAATGTGCTGCTTAACACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58515 lncRNA upstream 2839 2415700 ~ 2425283 (+) True G51354
TU58426 lncRNA upstream 26755 2401033 ~ 2401367 (+) True G51272
TU58424 lncRNA upstream 27228 2399778 ~ 2400894 (+) True G51270
TU58522 lncRNA upstream 59708 2368182 ~ 2368414 (+) True G51358
TU58409 lncRNA upstream 64951 2357933 ~ 2363171 (+) True G51265
TU58551 lncRNA downstream 126417 2554739 ~ 2592079 (+) False G51384
TU58552 lncRNA downstream 126417 2554739 ~ 2592079 (+) False G51384
TU58549 lncRNA downstream 164528 2592850 ~ 2621187 (+) False G51384
TU58553 lncRNA downstream 164528 2592850 ~ 2594486 (+) True G51384
TU58568 lncRNA downstream 203455 2631777 ~ 2633862 (+) True G51394
CI01000009_02398010_02399639.mRNA mRNA upstream 28370 2396065 ~ 2399752 (+) True CI01000009_02398010_02399639
CI01000009_02375481_02385887.mRNA mRNA upstream 42121 2375076 ~ 2386001 (+) True CI01000009_02375481_02385887
CI01000009_02284485_02285584.mRNA mRNA upstream 141993 2284485 ~ 2286129 (+) True CI01000009_02284485_02285584
CI01000009_02233367_02235148.mRNA mRNA upstream 192329 2233367 ~ 2235793 (+) True CI01000009_02233367_02235148
CI01000009_02028234_02100154.mRNA mRNA upstream 327968 2028234 ~ 2100154 (+) True CI01000009_02028234_02100154
CI01000009_02449805_02450173.mRNA mRNA downstream 19675 2447997 ~ 2450356 (+) True CI01000009_02449805_02450173
CI01000009_02479541_02488142.mRNA mRNA downstream 51219 2479541 ~ 2488759 (+) True CI01000009_02479541_02488142
CI01000009_02499173_02519062.mRNA mRNA downstream 70647 2498969 ~ 2519155 (+) True CI01000009_02499173_02519062
CI01000009_02572388_02587828.mRNA mRNA downstream 144066 2572388 ~ 2588051 (+) True CI01000009_02572388_02587828
CI01000009_02596511_02597101.mRNA mRNA downstream 167644 2595966 ~ 2597112 (+) True CI01000009_02596511_02597101
TU58428 other upstream 77636 2255099 ~ 2350486 (+) True G51274
TU58306 other upstream 526696 1894235 ~ 1894364 (+) True G51182
TU58233 other upstream 746156 1680146 ~ 1681966 (+) True G51122
TU57959 other upstream 989767 1422847 ~ 1438355 (+) True G50926
TU57948 other upstream 1657889 769841 ~ 770233 (+) True G50920
TU58708 other downstream 633711 3062033 ~ 3062587 (+) True G51529
TU58745 other downstream 774450 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060
TU58746 other downstream 774450 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060
TU58749 other downstream 774450 3202772 ~ 3208306 (+) False CI01000009_03202999_03207060
TU58750 other downstream 774450 3202772 ~ 3207486 (+) False CI01000009_03202999_03207060

Expression Profile