RNA id: TU59705


Basic Information

Item Value
RNA id TU59705
length 898
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id G52409
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2563762 ~ 2566564 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGGTAATCCAGCCCTATCAGCTCCAAATCATCCATCATGTACGCCCGGCGTTTTGCCACTAGTTTGCCCTCCCTGCAGTTGACTGCCTTGAAGAATCGTTCAAAGCATTTCATCCCGTTCTCTGTCAGCAGTGAGGGGTCGAGCTGCAGCACATTGTTCTCAAAGAAGTCCTTGTTGATGTCAGGGTCAAGGTCGGGCTCGTCCCCCATGAGTTTGGAGTACCATTTGAAGCAGGCCTCCCGATCACACAAGAACACTGCATTCTCTGCCAGACACTTCCAGATCTGCTTAGCCTGAGGTGCGCACAGCCAGAGCTGCCCATCTTTTAGTAAGAACCTCAAGAAATTAAGCCGTTCCTGGACCTCCTGAACATGACTATACCGACTTCCTGGCCTAACTGTCTGAGGATCAAAGTCTGTGTGCTCTTTTGAGAACTGCCTCATATTCTCCATGTATGCAGACAGGTTCTCTGCTACAAGAGTGACTAGTGCATGGTTGTGCTGCAGTTGGTTGATTAGGTCATGTCGATAGAAGACATGGGGGCTCCGCTGTGTTTGACTTAAATTCTGGGGGGCTTCTCCAAAGAGGCTACAGATCTCCCGTATTTGCTTCAGTGCAGGAATCACCCATTTGTCATTAGTTCTTAATTCTTCTATGAACCTGTCTATCCACTGCATCTTCTGTGTGTCCCTGTCCTGGGAGCAGCTATAGTCCAAAATCTTGATGTGAGCACTAAGGGCCTGGTCCATTATATCCACAGGAACATCATCACTATGGGCCAAATTCCACAGCAGATTAAGCACTTTGTGAGCCATCACACCATCCTTGTCATCCTCTGCCAGTCGACGAATCAATTCCAGTAACTTCTCTCTCTGCTTTTTACTTGCATTAGTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59737 lncRNA downstream 50091 2512957 ~ 2513671 (-) True G52440
TU59670 lncRNA downstream 112122 2448366 ~ 2451640 (-) True G52379
TU59668 lncRNA downstream 135914 2427249 ~ 2427848 (-) True G52378
TU59612 lncRNA downstream 162382 2401035 ~ 2401380 (-) True G52330
TU59610 lncRNA downstream 162868 2399814 ~ 2400894 (-) True G52328
TU59702 lncRNA upstream 7922 2574486 ~ 2578978 (-) True G52406
TU59767 lncRNA upstream 244481 2811045 ~ 2811334 (-) True G52469
TU59776 lncRNA upstream 256398 2822962 ~ 2823928 (-) True G52478
TU59786 lncRNA upstream 345741 2912305 ~ 2912542 (-) True G52488
TU59787 lncRNA upstream 346554 2913118 ~ 2913345 (-) True G52489
CI01000009_02403219_02417215.mRNA mRNA downstream 146547 2403156 ~ 2417215 (-) True CI01000009_02403219_02417215
CI01000009_02391182_02393863.mRNA mRNA downstream 169899 2390445 ~ 2393863 (-) True CI01000009_02391182_02393863
CI01000009_02358636_02361913.mRNA mRNA downstream 201813 2358470 ~ 2361949 (-) True CI01000009_02358636_02361913
CI01000009_02352214_02356619.mRNA mRNA downstream 206921 2352214 ~ 2356841 (-) True CI01000009_02352214_02356619
CI01000009_02327693_02335035.mRNA mRNA downstream 228727 2327693 ~ 2335035 (-) True CI01000009_02327693_02335035
CI01000009_02591882_02593586.mRNA mRNA upstream 25299 2591863 ~ 2593761 (-) True CI01000009_02591882_02593586
CI01000009_02610459_02610721.mRNA mRNA upstream 43696 2610260 ~ 2610721 (-) True CI01000009_02610459_02610721
CI01000009_02654102_02655554.mRNA mRNA upstream 87538 2654102 ~ 2656438 (-) True CI01000009_02654102_02655554
CI01000009_02682050_02707583.mRNA mRNA upstream 115044 2681608 ~ 2707623 (-) True CI01000009_02682050_02707583
CI01000009_02786421_02791586.mRNA mRNA upstream 219747 2786311 ~ 2792435 (-) True CI01000009_02786421_02791586
TU59706 other downstream 1229 2551724 ~ 2562533 (-) True G52410
TU59634 other downstream 322998 2240019 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59630 other downstream 322998 2240693 ~ 2240764 (-) True CI01000009_02239426_02240738
TU59631 other downstream 322998 2239880 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59632 other downstream 323283 2239460 ~ 2240479 (-) False CI01000009_02239426_02240738
TU59711 other upstream 317124 2899254 ~ 2899407 (-) True G52415
TU59814 other upstream 694639 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU60172 other upstream 1650856 4217420 ~ 4231469 (-) True G52828
TU60944 other upstream 2935831 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 5859257 8425821 ~ 8428012 (-) True G55814

Expression Profile