RNA id: TU59776


Basic Information

Item Value
RNA id TU59776
length 706
lncRNA type intronic
GC content 0.31
exon number 2
gene id G52478
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2822962 ~ 2823928 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTTTTTTCAGGCACCTGTCAATTTTGAGATTTTGCACTTTTTGGCTTTTCATAAAGTGTTTTTTCAGACTGGTGGAAAGAAAACATCCAAAATACATTTTTAAGTGTATATCTTATAGCACTTTATCTATTTGCGTCTATAGATTTCAATTACAGTAAATATCTTTAAAGGCCGTTTTCTCAAAATGAGTTTTTTCTTCTGCTCTGAGTCAGAAATCTCCACTTCAGCAGAACTTATATACACCAAACTTTACAGTTTTATTCCTATCTATATTCTGAAGGCTTTTACAGAGGGATTTGTTGATTTATCATTCCTATCCTGAGTTATAGGTCCTTTTACTCAAAAAAACATGGCGAAAATAGATTTTTTAAGGCTATTGTCAGTATTCTCTAATTTACTAAAGCACAAAATAAGATATCCAGAATCCCCTCTGTAAAAGCCCTTTCATCTAATATGTCAACAAATAGAACCAAGAATTTTAAACCTGGACCTTTCCAATTTCCAGATTTTGTTTTTGGAAATGTATGCAAATTAGCATATATTTAAGTATATAAGGCCTCATTTGCATATTAAAACATACATTTATTCAAAACTTGTAATACATTTTTTTCTTATGTTTATGCCAGTAATAAACTGAAGAAGTTTCACAGTGATATCTTCTAATTTAAAAAAAATCCCTATTCACCTGTAGTGTCTCGCCTTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59767 lncRNA downstream 11628 2811045 ~ 2811334 (-) True G52469
TU59702 lncRNA downstream 243984 2574486 ~ 2578978 (-) True G52406
TU59705 lncRNA downstream 256398 2563762 ~ 2566564 (-) True G52409
TU59737 lncRNA downstream 309291 2512957 ~ 2513671 (-) True G52440
TU59670 lncRNA downstream 371322 2448366 ~ 2451640 (-) True G52379
TU59786 lncRNA upstream 88377 2912305 ~ 2912542 (-) True G52488
TU59787 lncRNA upstream 89190 2913118 ~ 2913345 (-) True G52489
TU59873 lncRNA upstream 159667 2983595 ~ 2983857 (-) True CI01000009_02975388_02982670
TU59874 lncRNA upstream 171721 2995649 ~ 2995905 (-) True G52553
TU59818 lncRNA upstream 181636 3027695 ~ 3033677 (-) True G52503
CI01000009_02786421_02791586.mRNA mRNA downstream 30527 2786311 ~ 2792435 (-) True CI01000009_02786421_02791586
CI01000009_02682050_02707583.mRNA mRNA downstream 115339 2681608 ~ 2707623 (-) True CI01000009_02682050_02707583
CI01000009_02654102_02655554.mRNA mRNA downstream 166524 2654102 ~ 2656438 (-) True CI01000009_02654102_02655554
CI01000009_02610459_02610721.mRNA mRNA downstream 212241 2610260 ~ 2610721 (-) True CI01000009_02610459_02610721
CI01000009_02591882_02593586.mRNA mRNA downstream 229201 2591863 ~ 2593761 (-) True CI01000009_02591882_02593586
CI01000009_02844171_02861309.mRNA mRNA upstream 19083 2843011 ~ 2861309 (-) True CI01000009_02844171_02861309
CI01000009_02885473_02893975.mRNA mRNA upstream 61540 2885468 ~ 2893975 (-) False CI01000009_02885473_02893975
CI01000009_02904768_02914992.mRNA mRNA upstream 80763 2904691 ~ 2915247 (-) True CI01000009_02904768_02914992
CI01000009_02916137_02917550.mRNA mRNA upstream 91713 2915641 ~ 2917550 (-) True CI01000009_02916137_02917550
CI01000009_02975388_02982670.mRNA mRNA upstream 151460 2975388 ~ 2985391 (-) False CI01000009_02975388_02982670
TU59706 other downstream 260429 2551724 ~ 2562533 (-) True G52410
TU59634 other downstream 582198 2240019 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59711 other upstream 59760 2899254 ~ 2899407 (-) True G52415
TU59814 other upstream 437275 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU60172 other upstream 1393492 4217420 ~ 4231469 (-) True G52828
TU60944 other upstream 2678467 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 5601893 8425821 ~ 8428012 (-) True G55814

Expression Profile