RNA id: TU58669


Basic Information

Item Value
RNA id TU58669
length 250
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G51495
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2901474 ~ 2901723 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAATAGTCCATAGTTCTAATTTACAGCCAGTGTAGAAAAACTTGTCTTCCTCTAGCTATTTAAAATAATACTTGCCAAAGACAACCTTACAATGATCACTGTACCAGGTTTGGCAGGGAAAAACATACCTACTGAAGTAAGTACTTTGCAAGGAAATAACAGGAAAATACAGATAGAATTCAAGCGTGATTAAGATTTCTGTATGAATTAGCCAGGAGAGTGGTGTCCATCATGTCAGTGCAAAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58562 lncRNA upstream 57155 2840410 ~ 2844319 (+) True G51388
TU58644 lncRNA upstream 77768 2822962 ~ 2823706 (+) True G51470
TU58568 lncRNA upstream 267612 2631777 ~ 2633862 (+) True G51394
TU58549 lncRNA upstream 280287 2592850 ~ 2621187 (+) False G51384
TU58553 lncRNA upstream 306988 2592850 ~ 2594486 (+) True G51384
TU58670 lncRNA downstream 224 2901947 ~ 2902312 (+) True G51496
TU58675 lncRNA downstream 5643 2907366 ~ 2907596 (+) True G51500
TU58676 lncRNA downstream 7849 2909572 ~ 2909938 (+) True G51501
TU58677 lncRNA downstream 8260 2909983 ~ 2910239 (+) True G51502
TU58678 lncRNA downstream 8853 2910576 ~ 2910931 (+) True G51503
CI01000009_02799246_02827589.mRNA mRNA upstream 73834 2799031 ~ 2827640 (+) True CI01000009_02799246_02827589
CI01000009_02713403_02713914.mRNA mRNA upstream 187476 2712958 ~ 2713998 (+) True CI01000009_02713403_02713914
CI01000009_02674026_02678655.mRNA mRNA upstream 222728 2673802 ~ 2678746 (+) True CI01000009_02674026_02678655
CI01000009_02667840_02668883.mRNA mRNA upstream 232310 2667442 ~ 2669164 (+) True CI01000009_02667840_02668883
CI01000009_02656782_02657768.mRNA mRNA upstream 243651 2656557 ~ 2657823 (+) True CI01000009_02656782_02657768
CI01000009_02918681_02973307.mRNA mRNA downstream 16958 2918681 ~ 2973952 (+) True CI01000009_02918681_02973307
CI01000009_03123137_03137452.mRNA mRNA downstream 220393 3122116 ~ 3138311 (+) True CI01000009_03123137_03137452
CI01000009_03145417_03159851.mRNA mRNA downstream 243694 3145417 ~ 3159914 (+) True CI01000009_03145417_03159851
CI01000009_03164135_03169470.mRNA mRNA downstream 260595 3162318 ~ 3170140 (+) True CI01000009_03164135_03169470
CI01000009_03202999_03207060.mRNA mRNA downstream 300484 3202207 ~ 3207428 (+) False CI01000009_03202999_03207060
TU58428 other upstream 550988 2255099 ~ 2350486 (+) True G51274
TU58306 other upstream 1000048 1894235 ~ 1894364 (+) True G51182
TU58233 other upstream 1219508 1680146 ~ 1681966 (+) True G51122
TU57959 other upstream 1463119 1422847 ~ 1438355 (+) True G50926
TU57948 other upstream 2131241 769841 ~ 770233 (+) True G50920
TU58708 other downstream 160310 3062033 ~ 3062587 (+) True G51529
TU58745 other downstream 301049 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060
TU58746 other downstream 301049 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060
TU58749 other downstream 301049 3202772 ~ 3208306 (+) False CI01000009_03202999_03207060
TU58750 other downstream 301049 3202772 ~ 3207486 (+) False CI01000009_03202999_03207060

Expression Profile