RNA id: TU58676


Basic Information

Item Value
RNA id TU58676
length 367
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G51501
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2909572 ~ 2909938 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCATCACTGAGGTAGACGCATATGATAAAAACACGTTCCTTGTCGATAGGACTGTCAGTCAGCATTTTCCCAACAAATCTCAACACATTGCTCACCAGACCTTGCCTAAAGTTGAGAAAAAAAGCTAATTTATCCCCAAACTTTGATCAGTTAAAAAACTGACTTTTAACTTTTTCTATTCTCAAATCTATGTGCATCCTAACTACAAACAGCTAATGTGAGCATCAGCCACAGCCTGCACGGATGAGCTCATTGGTGACCTGTTTGCTCACCATCTCCATCTTGACAGCCTTATAGACTAAACAGACTAAACTGCATCTGACATACTTGTGCCAAGCATTTTTATATGCTCATTATACTAATGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58675 lncRNA upstream 1976 2907366 ~ 2907596 (+) True G51500
TU58670 lncRNA upstream 7260 2901947 ~ 2902312 (+) True G51496
TU58669 lncRNA upstream 7849 2901474 ~ 2901723 (+) True G51495
TU58562 lncRNA upstream 65253 2840410 ~ 2844319 (+) True G51388
TU58644 lncRNA upstream 85866 2822962 ~ 2823706 (+) True G51470
TU58677 lncRNA downstream 45 2909983 ~ 2910239 (+) True G51502
TU58678 lncRNA downstream 638 2910576 ~ 2910931 (+) True G51503
TU58679 lncRNA downstream 3434 2913372 ~ 2913800 (+) True G51504
TU58680 lncRNA downstream 3945 2913883 ~ 2914099 (+) True G51505
TU58683 lncRNA downstream 73605 2983543 ~ 2983764 (+) True G51507
CI01000009_02799246_02827589.mRNA mRNA upstream 81932 2799031 ~ 2827640 (+) True CI01000009_02799246_02827589
CI01000009_02713403_02713914.mRNA mRNA upstream 195574 2712958 ~ 2713998 (+) True CI01000009_02713403_02713914
CI01000009_02674026_02678655.mRNA mRNA upstream 230826 2673802 ~ 2678746 (+) True CI01000009_02674026_02678655
CI01000009_02667840_02668883.mRNA mRNA upstream 240408 2667442 ~ 2669164 (+) True CI01000009_02667840_02668883
CI01000009_02656782_02657768.mRNA mRNA upstream 251749 2656557 ~ 2657823 (+) True CI01000009_02656782_02657768
CI01000009_02918681_02973307.mRNA mRNA downstream 8743 2918681 ~ 2973952 (+) True CI01000009_02918681_02973307
CI01000009_03123137_03137452.mRNA mRNA downstream 212178 3122116 ~ 3138311 (+) True CI01000009_03123137_03137452
CI01000009_03145417_03159851.mRNA mRNA downstream 235479 3145417 ~ 3159914 (+) True CI01000009_03145417_03159851
CI01000009_03164135_03169470.mRNA mRNA downstream 252380 3162318 ~ 3170140 (+) True CI01000009_03164135_03169470
CI01000009_03202999_03207060.mRNA mRNA downstream 292269 3202207 ~ 3207428 (+) False CI01000009_03202999_03207060
TU58428 other upstream 559086 2255099 ~ 2350486 (+) True G51274
TU58306 other upstream 1008146 1894235 ~ 1894364 (+) True G51182
TU58233 other upstream 1227606 1680146 ~ 1681966 (+) True G51122
TU57959 other upstream 1471217 1422847 ~ 1438355 (+) True G50926
TU57948 other upstream 2139339 769841 ~ 770233 (+) True G50920
TU58708 other downstream 152095 3062033 ~ 3062587 (+) True G51529
TU58745 other downstream 292834 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060
TU58746 other downstream 292834 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060
TU58749 other downstream 292834 3202772 ~ 3208306 (+) False CI01000009_03202999_03207060
TU58750 other downstream 292834 3202772 ~ 3207486 (+) False CI01000009_03202999_03207060

Expression Profile