RNA id: TU59786


Basic Information

Item Value
RNA id TU59786
length 238
lncRNA type intronic
GC content 0.34
exon number 1
gene id G52488
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2912305 ~ 2912542 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAGCACTTTTCAGTTTCCTCGCTGCTTTTGTTTTTCGGTCTAAATTTATTATAAAGGAAGGATTTATTCAGTTTCTTTTTTTCTGTTGTCATGTTGTTTTGTCACACATTCTGTTGCCTTTCACTAAATGTCATCTGAAAAGGTTTGCAGGAATCCCCCAGTGAGAAAATAATAATGAGGCCATTTGCAAATTTCACTTGTCCTTCAAGTTATGAAAAAACTGCAGTTATTTTCTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59776 lncRNA downstream 88377 2822962 ~ 2823928 (-) True G52478
TU59767 lncRNA downstream 100971 2811045 ~ 2811334 (-) True G52469
TU59702 lncRNA downstream 333327 2574486 ~ 2578978 (-) True G52406
TU59705 lncRNA downstream 345741 2563762 ~ 2566564 (-) True G52409
TU59737 lncRNA downstream 398634 2512957 ~ 2513671 (-) True G52440
TU59787 lncRNA upstream 576 2913118 ~ 2913345 (-) True G52489
TU59873 lncRNA upstream 71053 2983595 ~ 2983857 (-) True CI01000009_02975388_02982670
TU59874 lncRNA upstream 83107 2995649 ~ 2995905 (-) True G52553
TU59818 lncRNA upstream 93022 3027695 ~ 3033677 (-) True G52503
TU59817 lncRNA upstream 93599 3009778 ~ 3017660 (-) True CI01000009_03009238_03025860
CI01000009_02885473_02893975.mRNA mRNA downstream 18330 2885468 ~ 2893975 (-) False CI01000009_02885473_02893975
CI01000009_02844171_02861309.mRNA mRNA downstream 50996 2843011 ~ 2861309 (-) True CI01000009_02844171_02861309
CI01000009_02786421_02791586.mRNA mRNA downstream 119870 2786311 ~ 2792435 (-) True CI01000009_02786421_02791586
CI01000009_02682050_02707583.mRNA mRNA downstream 204682 2681608 ~ 2707623 (-) True CI01000009_02682050_02707583
CI01000009_02654102_02655554.mRNA mRNA downstream 255867 2654102 ~ 2656438 (-) True CI01000009_02654102_02655554
CI01000009_02916137_02917550.mRNA mRNA upstream 3099 2915641 ~ 2917550 (-) True CI01000009_02916137_02917550
CI01000009_02975388_02982670.mRNA mRNA upstream 62846 2975388 ~ 2985391 (-) False CI01000009_02975388_02982670
CI01000009_03006152_03007243.mRNA mRNA upstream 92844 3005386 ~ 3007855 (-) False CI01000009_03006152_03007243
CI01000009_03009238_03025860.mRNA mRNA upstream 95818 3008360 ~ 3025937 (-) False CI01000009_03009238_03025860
CI01000009_03140599_03143635.mRNA mRNA upstream 228057 3140599 ~ 3143635 (-) True CI01000009_03140599_03143635
TU59711 other downstream 12898 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 349772 2551724 ~ 2562533 (-) True G52410
TU59634 other downstream 671541 2240019 ~ 2240764 (-) False CI01000009_02239426_02240738
TU59814 other upstream 348661 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU60172 other upstream 1304878 4217420 ~ 4231469 (-) True G52828
TU60944 other upstream 2589853 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 5513279 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 5945610 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555

Expression Profile