RNA id: TU58684


Basic Information

Item Value
RNA id TU58684
length 332
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G51508
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2988908 ~ 2989239 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTAGAAATAATTTTAAAAAACAATAAAATACAAGCTAATAAATTCCTCATAAAAAAACGAATGTCTGATGAATATTTTCTACGCTGCTCTTCAAAAGTTTTGGGTGACTAAGATTTTTGATAACACTTTTAGGGTCCAATTCTAAATAAATGTTTTTGAAAAAAGTCTCTTATGCTCACCAAGGCAGTATTTATTTCATAAAAATACAGTAAAAACAGTAAGAAACTTTTCTTATTATTATCAATGTTGAAAACAGTTGTGATGCTTAATATCTTTGTGGATACTGCGATACAATTTTTTCCAGCTTTGTTTTATTAAAATGAAGGGTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58683 lncRNA upstream 5144 2983543 ~ 2983764 (+) True G51507
TU58680 lncRNA upstream 74809 2913883 ~ 2914099 (+) True G51505
TU58679 lncRNA upstream 75108 2913372 ~ 2913800 (+) True G51504
TU58678 lncRNA upstream 77977 2910576 ~ 2910931 (+) True G51503
TU58677 lncRNA upstream 78669 2909983 ~ 2910239 (+) True G51502
TU58686 lncRNA downstream 8640 2997879 ~ 2998415 (+) True G51510
TU58690 lncRNA downstream 12371 3001610 ~ 3001908 (+) True G51514
TU58699 lncRNA downstream 56910 3046149 ~ 3047099 (+) True G51522
TU58702 lncRNA downstream 60553 3049792 ~ 3050108 (+) True G51523
TU58704 lncRNA downstream 61670 3050909 ~ 3051364 (+) True G51525
CI01000009_02918681_02973307.mRNA mRNA upstream 14956 2918681 ~ 2973952 (+) True CI01000009_02918681_02973307
CI01000009_02799246_02827589.mRNA mRNA upstream 161268 2799031 ~ 2827640 (+) True CI01000009_02799246_02827589
CI01000009_02713403_02713914.mRNA mRNA upstream 274910 2712958 ~ 2713998 (+) True CI01000009_02713403_02713914
CI01000009_02674026_02678655.mRNA mRNA upstream 310162 2673802 ~ 2678746 (+) True CI01000009_02674026_02678655
CI01000009_02667840_02668883.mRNA mRNA upstream 319744 2667442 ~ 2669164 (+) True CI01000009_02667840_02668883
CI01000009_03123137_03137452.mRNA mRNA downstream 132877 3122116 ~ 3138311 (+) True CI01000009_03123137_03137452
CI01000009_03145417_03159851.mRNA mRNA downstream 156178 3145417 ~ 3159914 (+) True CI01000009_03145417_03159851
CI01000009_03164135_03169470.mRNA mRNA downstream 173079 3162318 ~ 3170140 (+) True CI01000009_03164135_03169470
CI01000009_03202999_03207060.mRNA mRNA downstream 212968 3202207 ~ 3207428 (+) False CI01000009_03202999_03207060
CI01000009_03211734_03220047.mRNA mRNA downstream 222495 3211734 ~ 3221307 (+) False CI01000009_03211734_03220047
TU58428 other upstream 638422 2255099 ~ 2350486 (+) True G51274
TU58306 other upstream 1087482 1894235 ~ 1894364 (+) True G51182
TU58233 other upstream 1306942 1680146 ~ 1681966 (+) True G51122
TU57959 other upstream 1550553 1422847 ~ 1438355 (+) True G50926
TU57948 other upstream 2218675 769841 ~ 770233 (+) True G50920
TU58708 other downstream 72794 3062033 ~ 3062587 (+) True G51529
TU58745 other downstream 213533 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060
TU58746 other downstream 213533 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060
TU58749 other downstream 213533 3202772 ~ 3208306 (+) False CI01000009_03202999_03207060
TU58750 other downstream 213533 3202772 ~ 3207486 (+) False CI01000009_03202999_03207060

Expression Profile