Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU58699 |
| length | 951 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 1 |
| gene id | G51522 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 3046149 ~ 3047099 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU58690 | lncRNA | upstream | 44241 | 3001610 ~ 3001908 (+) | True | G51514 |
| TU58686 | lncRNA | upstream | 47734 | 2997879 ~ 2998415 (+) | True | G51510 |
| TU58684 | lncRNA | upstream | 56910 | 2988908 ~ 2989239 (+) | True | G51508 |
| TU58683 | lncRNA | upstream | 62385 | 2983543 ~ 2983764 (+) | True | G51507 |
| TU58680 | lncRNA | upstream | 132050 | 2913883 ~ 2914099 (+) | True | G51505 |
| TU58702 | lncRNA | downstream | 2693 | 3049792 ~ 3050108 (+) | True | G51523 |
| TU58704 | lncRNA | downstream | 3810 | 3050909 ~ 3051364 (+) | True | G51525 |
| TU58706 | lncRNA | downstream | 7233 | 3054332 ~ 3055012 (+) | True | G51527 |
| TU58710 | lncRNA | downstream | 17101 | 3064200 ~ 3064432 (+) | True | G51531 |
| TU58716 | lncRNA | downstream | 29043 | 3076142 ~ 3076380 (+) | True | G51537 |
| CI01000009_02918681_02973307.mRNA | mRNA | upstream | 72197 | 2918681 ~ 2973952 (+) | True | CI01000009_02918681_02973307 |
| CI01000009_02799246_02827589.mRNA | mRNA | upstream | 218509 | 2799031 ~ 2827640 (+) | True | CI01000009_02799246_02827589 |
| CI01000009_02713403_02713914.mRNA | mRNA | upstream | 332151 | 2712958 ~ 2713998 (+) | True | CI01000009_02713403_02713914 |
| CI01000009_02674026_02678655.mRNA | mRNA | upstream | 367403 | 2673802 ~ 2678746 (+) | True | CI01000009_02674026_02678655 |
| CI01000009_02667840_02668883.mRNA | mRNA | upstream | 376985 | 2667442 ~ 2669164 (+) | True | CI01000009_02667840_02668883 |
| CI01000009_03123137_03137452.mRNA | mRNA | downstream | 75017 | 3122116 ~ 3138311 (+) | True | CI01000009_03123137_03137452 |
| CI01000009_03145417_03159851.mRNA | mRNA | downstream | 98318 | 3145417 ~ 3159914 (+) | True | CI01000009_03145417_03159851 |
| CI01000009_03164135_03169470.mRNA | mRNA | downstream | 115219 | 3162318 ~ 3170140 (+) | True | CI01000009_03164135_03169470 |
| CI01000009_03202999_03207060.mRNA | mRNA | downstream | 155108 | 3202207 ~ 3207428 (+) | False | CI01000009_03202999_03207060 |
| CI01000009_03211734_03220047.mRNA | mRNA | downstream | 164635 | 3211734 ~ 3221307 (+) | False | CI01000009_03211734_03220047 |
| TU58428 | other | upstream | 695663 | 2255099 ~ 2350486 (+) | True | G51274 |
| TU58306 | other | upstream | 1144723 | 1894235 ~ 1894364 (+) | True | G51182 |
| TU58233 | other | upstream | 1364183 | 1680146 ~ 1681966 (+) | True | G51122 |
| TU57959 | other | upstream | 1607794 | 1422847 ~ 1438355 (+) | True | G50926 |
| TU57948 | other | upstream | 2275916 | 769841 ~ 770233 (+) | True | G50920 |
| TU58708 | other | downstream | 14934 | 3062033 ~ 3062587 (+) | True | G51529 |
| TU58745 | other | downstream | 155673 | 3202772 ~ 3207924 (+) | False | CI01000009_03202999_03207060 |
| TU58746 | other | downstream | 155673 | 3202772 ~ 3208984 (+) | False | CI01000009_03202999_03207060 |
| TU58749 | other | downstream | 155673 | 3202772 ~ 3208306 (+) | False | CI01000009_03202999_03207060 |
| TU58750 | other | downstream | 155673 | 3202772 ~ 3207486 (+) | False | CI01000009_03202999_03207060 |
