RNA id: TU59878


Basic Information

Item Value
RNA id TU59878
length 556
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G52557
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3049098 ~ 3049653 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGGTCTGAATACTTTCCGTACCCACTGTATGTAATCCTAAATAAAAAACTTGAATAAATGGTAAATATTTTCTAAAAAAGTACAAAGTAACAAGTAAAAAAAAAAAAAATTGCAAATGCACAAAAGGCACTATGGAGATTTTCCATTTACAGATTTTTCCCTGACCTTCTTGTCTCAGTAAAGTAAGGGTGAACTATTGCTGAAAACACAAACCCTACTTAGCAGTCAGATGTCTGTATGAACAAAGACATTTATATTTGCACCGGAACAGTGGATTGCGGCTTTGAAATCGAGAGCATTCGGACTTGTTCTTCCAAACTGTCTGTAGTTGTCAGGAAAACACTATAATAACGCCTTTTTTTCACTTGTTAATGACTGCTATGTGTAGGAACTGCAGATGAAAGCATGATTGGCAAAATGTTGGTGACATTCATTATTATGTAAACATAATGGGCGGGTAAAAATTATTGAGGTCATGTACATATATTGCGCGATAAGTCGATATATTGATTATTGCTACAGGCATAGTTCTCACATTGTTTTGCTGTTCTCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59877 lncRNA downstream 3001 3045889 ~ 3046097 (-) True G52556
TU59818 lncRNA downstream 15421 3027695 ~ 3033677 (-) True G52503
TU59817 lncRNA downstream 31438 3009778 ~ 3017660 (-) True CI01000009_03009238_03025860
TU59874 lncRNA downstream 53193 2995649 ~ 2995905 (-) True G52553
TU59873 lncRNA downstream 65241 2983595 ~ 2983857 (-) True CI01000009_02975388_02982670
TU59887 lncRNA upstream 21508 3071161 ~ 3071388 (-) True G52566
TU59836 lncRNA upstream 32338 3081991 ~ 3082437 (-) True G52518
TU59910 lncRNA upstream 98275 3147928 ~ 3149432 (-) True G52589
TU59800 lncRNA upstream 100610 3150263 ~ 3156146 (-) True G52494
TU59805 lncRNA upstream 153112 3202765 ~ 3207426 (-) True G52496
CI01000009_03009238_03025860.mRNA mRNA downstream 23161 3008360 ~ 3025937 (-) False CI01000009_03009238_03025860
CI01000009_03006152_03007243.mRNA mRNA downstream 41243 3005386 ~ 3007855 (-) False CI01000009_03006152_03007243
CI01000009_02975388_02982670.mRNA mRNA downstream 63707 2975388 ~ 2985391 (-) False CI01000009_02975388_02982670
CI01000009_02916137_02917550.mRNA mRNA downstream 131548 2915641 ~ 2917550 (-) True CI01000009_02916137_02917550
CI01000009_02904768_02914992.mRNA mRNA downstream 133851 2904691 ~ 2915247 (-) True CI01000009_02904768_02914992
CI01000009_03140599_03143635.mRNA mRNA upstream 90946 3140599 ~ 3143635 (-) True CI01000009_03140599_03143635
CI01000009_03171440_03194494.mRNA mRNA upstream 121787 3171440 ~ 3195145 (-) True CI01000009_03171440_03194494
CI01000009_03226613_03234223.mRNA mRNA upstream 176115 3225768 ~ 3234223 (-) True CI01000009_03226613_03234223
CI01000009_03235111_03242103.mRNA mRNA upstream 185361 3235014 ~ 3242103 (-) True CI01000009_03235111_03242103
CI01000009_03244366_03259106.mRNA mRNA upstream 193945 3243598 ~ 3259106 (-) True CI01000009_03244366_03259106
TU59711 other downstream 149691 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 486565 2551724 ~ 2562533 (-) True G52410
TU59630 other downstream 808334 2240693 ~ 2240764 (-) True CI01000009_02239426_02240738
TU59814 other upstream 211550 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU60172 other upstream 1167767 4217420 ~ 4231469 (-) True G52828
TU60944 other upstream 2452742 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 5376168 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 5808499 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555

Expression Profile