RNA id: TU59836


Basic Information

Item Value
RNA id TU59836
length 447
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G52518
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3081991 ~ 3082437 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCCTTAACTCTCTTGGGCATAGAGTTCACCAGAGCTTCACAGGTTGCCACTGGAGTCCTCTTCCACTCCTCCATGACGACATCACGGAGCTGGTGGATGTTAGAGACCTTGTGCTCCTCCACCTTCCGTTTGAGGATGCCCCACAGATGCTCAATAGGGTTTAGGTACCTTCAGCTTCTTTAGCAAGGCAGTGGTCATCTTGGAGGTGTGTTTGGGGTCGTTATCATGTTGGAATACTGCCCTGCAGCCTAGTCTCCGAAGGGAGGGGATCATGCTCTGCTTCAGTATGTCACAGTACATGTTGGCATTCATGGTTCCCTCAATGAACTGTACCTCCCCAGTGCCGGCAGCACTCATGCAGCCCCAGACCATGACACTCCCACCACCATGCTTGACTGTAGGCAAGACACACTTGTCTTTGTACTCCTCACCTGGTTGCCGCCACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59887 lncRNA downstream 10603 3071161 ~ 3071388 (-) True G52566
TU59878 lncRNA downstream 32338 3049098 ~ 3049653 (-) True G52557
TU59877 lncRNA downstream 35894 3045889 ~ 3046097 (-) True G52556
TU59818 lncRNA downstream 48314 3027695 ~ 3033677 (-) True G52503
TU59817 lncRNA downstream 64331 3009778 ~ 3017660 (-) True CI01000009_03009238_03025860
TU59910 lncRNA upstream 65491 3147928 ~ 3149432 (-) True G52589
TU59800 lncRNA upstream 67826 3150263 ~ 3156146 (-) True G52494
TU59805 lncRNA upstream 120328 3202765 ~ 3207426 (-) True G52496
TU59839 lncRNA upstream 138295 3220732 ~ 3221942 (-) True G52521
TU59914 lncRNA upstream 140195 3222632 ~ 3222961 (-) True G52593
CI01000009_03009238_03025860.mRNA mRNA downstream 56054 3008360 ~ 3025937 (-) False CI01000009_03009238_03025860
CI01000009_03006152_03007243.mRNA mRNA downstream 74136 3005386 ~ 3007855 (-) False CI01000009_03006152_03007243
CI01000009_02975388_02982670.mRNA mRNA downstream 96600 2975388 ~ 2985391 (-) False CI01000009_02975388_02982670
CI01000009_02916137_02917550.mRNA mRNA downstream 164441 2915641 ~ 2917550 (-) True CI01000009_02916137_02917550
CI01000009_02904768_02914992.mRNA mRNA downstream 166744 2904691 ~ 2915247 (-) True CI01000009_02904768_02914992
CI01000009_03140599_03143635.mRNA mRNA upstream 58162 3140599 ~ 3143635 (-) True CI01000009_03140599_03143635
CI01000009_03171440_03194494.mRNA mRNA upstream 89003 3171440 ~ 3195145 (-) True CI01000009_03171440_03194494
CI01000009_03226613_03234223.mRNA mRNA upstream 143331 3225768 ~ 3234223 (-) True CI01000009_03226613_03234223
CI01000009_03235111_03242103.mRNA mRNA upstream 152577 3235014 ~ 3242103 (-) True CI01000009_03235111_03242103
CI01000009_03244366_03259106.mRNA mRNA upstream 161161 3243598 ~ 3259106 (-) True CI01000009_03244366_03259106
TU59711 other downstream 182584 2899254 ~ 2899407 (-) True G52415
TU59706 other downstream 519458 2551724 ~ 2562533 (-) True G52410
TU59630 other downstream 841227 2240693 ~ 2240764 (-) True CI01000009_02239426_02240738
TU59814 other upstream 178766 3261203 ~ 3261957 (-) True CI01000009_03261739_03262843
TU60172 other upstream 1134983 4217420 ~ 4231469 (-) True G52828
TU60944 other upstream 2419958 5502395 ~ 5505248 (-) False G53515
TU63500 other upstream 5343384 8425821 ~ 8428012 (-) True G55814
TU64878 other upstream 5775715 8858152 ~ 8860563 (-) True CI01000009_08858198_08860555

Expression Profile