RNA id: TU58732


Basic Information

Item Value
RNA id TU58732
length 450
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G51552
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3108463 ~ 3108912 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTCGTTCCACACCCGTAAGACCTTTGTTCATCTTCGGAACACAAATTAAGATATTTTTTAAGAAATCCGAGAGGTATATGACTCATCCATAGACAGAAATATAATCAACACTTTCAAGGTCCAGAAAGGTACTAAGACATCATTAAAACAGTCGACGTGACTGCAGTGGTTCAACCTTAATTTTATAAAGCAACGAGAATACTTTTTGTGCGCAAAAACAAAACAAAAATAACTTTATTAATTATCGTTGGAGTTGTGATGTGGACTCTTGTCGTTCCTAATATTTTTATAACAATTTTTAAAATTATATCTTTATCGTTATAGTTATCGTCCTTGGTGTAAATTGGTCTATCGCTAAGTTCAAAAAACTGTTCCTAACTCCAGGCAAGTTCACACAACTCTATACCACTCACATAGCCTACTCTGTTCTGGAAAGCCGTGAACACAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58734 lncRNA upstream 452 3107726 ~ 3108011 (+) True G51553
TU58718 lncRNA upstream 26053 3081929 ~ 3082410 (+) True G51539
TU58716 lncRNA upstream 32083 3076142 ~ 3076380 (+) True G51537
TU58710 lncRNA upstream 44031 3064200 ~ 3064432 (+) True G51531
TU58706 lncRNA upstream 53451 3054332 ~ 3055012 (+) True G51527
TU58739 lncRNA downstream 8946 3117858 ~ 3118356 (+) True G51558
TU58740 lncRNA downstream 9881 3118793 ~ 3119020 (+) True G51559
TU58800 lncRNA downstream 10552 3119464 ~ 3149432 (+) True G51610
TU58773 lncRNA downstream 112101 3221013 ~ 3222297 (+) True CI01000009_03211734_03220047
TU58779 lncRNA downstream 113847 3222759 ~ 3223865 (+) True G51589
CI01000009_02918681_02973307.mRNA mRNA upstream 134511 2918681 ~ 2973952 (+) True CI01000009_02918681_02973307
CI01000009_02799246_02827589.mRNA mRNA upstream 280823 2799031 ~ 2827640 (+) True CI01000009_02799246_02827589
CI01000009_02713403_02713914.mRNA mRNA upstream 394465 2712958 ~ 2713998 (+) True CI01000009_02713403_02713914
CI01000009_02674026_02678655.mRNA mRNA upstream 429717 2673802 ~ 2678746 (+) True CI01000009_02674026_02678655
CI01000009_02667840_02668883.mRNA mRNA upstream 439299 2667442 ~ 2669164 (+) True CI01000009_02667840_02668883
CI01000009_03123137_03137452.mRNA mRNA downstream 13204 3122116 ~ 3138311 (+) True CI01000009_03123137_03137452
CI01000009_03145417_03159851.mRNA mRNA downstream 36505 3145417 ~ 3159914 (+) True CI01000009_03145417_03159851
CI01000009_03164135_03169470.mRNA mRNA downstream 53406 3162318 ~ 3170140 (+) True CI01000009_03164135_03169470
CI01000009_03202999_03207060.mRNA mRNA downstream 93295 3202207 ~ 3207428 (+) False CI01000009_03202999_03207060
CI01000009_03211734_03220047.mRNA mRNA downstream 102822 3211734 ~ 3221307 (+) False CI01000009_03211734_03220047
TU58708 other upstream 45876 3062033 ~ 3062587 (+) True G51529
TU58428 other upstream 757977 2255099 ~ 2350486 (+) True G51274
TU58306 other upstream 1207037 1894235 ~ 1894364 (+) True G51182
TU58233 other upstream 1426497 1680146 ~ 1681966 (+) True G51122
TU57959 other upstream 1670108 1422847 ~ 1438355 (+) True G50926
TU58745 other downstream 93860 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060
TU58746 other downstream 93860 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060
TU58749 other downstream 93860 3202772 ~ 3208306 (+) False CI01000009_03202999_03207060
TU58750 other downstream 93860 3202772 ~ 3207486 (+) False CI01000009_03202999_03207060
TU58751 other downstream 93860 3202772 ~ 3208523 (+) False CI01000009_03202999_03207060

Expression Profile