RNA id: TU58800


Basic Information

Item Value
RNA id TU58800
length 1766
lncRNA type read_through
GC content 0.49
exon number 2
gene id G51610
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3119464 ~ 3149432 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTCTGTATCCACCTTATTCCTACGCCCCATGACGCTTTGCGCCAATTTTGGGTGTAACTTCCGTTAAGCTGTAAACAGTCAGTGAAAGGCTCGCTCTATGAGCGCAATAATACGTTTTTTTTTTGTTTGTTTTTTTGCTTTTTAAATGTTAAACCATAGAGATTTTATTTTAGCAGAAAACCGCAGCTTTTGCTTTTTTGACAACTCAAAGGCGTGATTCTCATTTCATTTCCCGTGAATCCTTGCAGATCTATTATGGATTTTAAATGATGATTTTTGCAGAAACCTAATCATTCAGGCAGTTTTGAGGATTGACAACCGCATTTACTTACAGATGTACACCTCGAAATGTCTCGTGCACACAACCTACAGTAGCGTCTGGAATAGGCCTACTACTGTCTGTATGAACTTCTTGTATGAAGTCGAATTCATCTGTCATATCTTCATTAACCGACAGCAGCTTTTATATCTGGGTGGATAGAGGAGCATTTTAGTTGCGTAAAACACAAAACATGAGCAGCTCCGTTGGAGAACAGTGACTAGATGTGAATCTAAAACTTTCAGATGACACACAGCTCATATCTCTGTCACTGTAAGCTGCACACGAAAACCCGCAATACAAAGAAGATGAGTGTTTCTCTCTGTGTGACAGACAACTAGTTGTCCAGTCTGGTTCCGTTCACATTTTTCATAATGCGATTCTAAAGGCCCATTCACACCAAGAATGATAACTATAAAGATAATGATAAAGATATAGTTTTAAAAATCATTCTAAATATAAAAGAATAGCAGAGTCCACACCACAGCTATAACGATAACGATAACGATATAGAGAAACGATATTGTTGGGATCACTTTCAGAGTGATTTTTTTCCCAGCTGTTGAACGATAAAACACTGACAGCCAATCAGAATCCATTCTAATTTAAGGGCTCGCGCATTTAAAATGGCAGACGACACTGCGGAGTTAGTCGCCGAGGTCCAGAAAAAGCCACCACTGTTTGACAAATCAAACCCCCTTTTTCAAGGCTACTTTAAAGAAAATGGATGTATGGAAAACAATAAATGGTGAGAAGTATTAACGATATATGCCAGGCTAGCAATTGCAACAATTACAGTGTAACAATTACCTCAGGTATCCAGCGCTAGTTTCAACATCATTGTCTTCCTTCTTTTGACGTTGCAGTGAAAAAGACTAGGCGTTGTTTTTATTCCACTATATTGACTTCGTTAGCTAAATTCACTGTTAGATTAGATCGATTGCACTAGCTATTCACTCGAAACATAACATGCTGAGGATACCTGCTGGTTAAAGCCGTGTAAATGCAACAAGAACAGCAAAAACAATGTACACACTTTGAAACCGTAGCGCGTGAGCTTAGACAGACCGTTATCGTTCATTGGTGTGGACGCAAATATAATTATCGTTATAGTAATCTTTAAAGATATCGTTCTTGGTGTGAACGGGCCTAAAAGGATTAGTCCACTTTCAAATAAAAATTTCCTGATAATTTACTCACACCCATGTCATCCAAGATGTCCATGTCCTTCTTTTTTCAGTCGAAAAGAACTTAAGGTTTTTGATGAAAACATTCCAGGATTATTCTCCTTATAGTTGACTTCAATGGTCTCCAAACGGTTGAAGGTCAAAATTACAGTTTCAGTGCAGCTTCAAACTGCTTTAAACGATACCAGACGAGGAATAAGGGTCTTATCTAGCGAAACGAAATGCGAAATGATCGGTCATTTTCTAAAAAAAAAAAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58740 lncRNA upstream 444 3118793 ~ 3119020 (+) True G51559
TU58739 lncRNA upstream 1108 3117858 ~ 3118356 (+) True G51558
TU58732 lncRNA upstream 10552 3108463 ~ 3108912 (+) True G51552
TU58734 lncRNA upstream 11453 3107726 ~ 3108011 (+) True G51553
TU58718 lncRNA upstream 37054 3081929 ~ 3082410 (+) True G51539
TU58773 lncRNA downstream 71581 3221013 ~ 3222297 (+) True CI01000009_03211734_03220047
TU58779 lncRNA downstream 73327 3222759 ~ 3223865 (+) True G51589
TU58771 lncRNA downstream 111765 3261197 ~ 3262009 (+) True G51581
TU58775 lncRNA downstream 112904 3262336 ~ 3262959 (+) True G51585
TU58759 lncRNA downstream 137896 3287328 ~ 3290810 (+) True G51569
CI01000009_02918681_02973307.mRNA mRNA upstream 145512 2918681 ~ 2973952 (+) True CI01000009_02918681_02973307
CI01000009_02799246_02827589.mRNA mRNA upstream 291824 2799031 ~ 2827640 (+) True CI01000009_02799246_02827589
CI01000009_02713403_02713914.mRNA mRNA upstream 405466 2712958 ~ 2713998 (+) True CI01000009_02713403_02713914
CI01000009_02674026_02678655.mRNA mRNA upstream 440718 2673802 ~ 2678746 (+) True CI01000009_02674026_02678655
CI01000009_02667840_02668883.mRNA mRNA upstream 450300 2667442 ~ 2669164 (+) True CI01000009_02667840_02668883
CI01000009_03164135_03169470.mRNA mRNA downstream 12886 3162318 ~ 3170140 (+) True CI01000009_03164135_03169470
CI01000009_03202999_03207060.mRNA mRNA downstream 52775 3202207 ~ 3207428 (+) False CI01000009_03202999_03207060
CI01000009_03211734_03220047.mRNA mRNA downstream 62302 3211734 ~ 3221307 (+) False CI01000009_03211734_03220047
CI01000009_03276572_03283625.mRNA mRNA downstream 127140 3276572 ~ 3284006 (+) True CI01000009_03276572_03283625
CI01000009_03301176_03305406.mRNA mRNA downstream 151744 3301176 ~ 3305595 (+) True CI01000009_03301176_03305406
TU58708 other upstream 56877 3062033 ~ 3062587 (+) True G51529
TU58428 other upstream 768978 2255099 ~ 2350486 (+) True G51274
TU58306 other upstream 1218038 1894235 ~ 1894364 (+) True G51182
TU58233 other upstream 1437498 1680146 ~ 1681966 (+) True G51122
TU57959 other upstream 1681109 1422847 ~ 1438355 (+) True G50926
TU58745 other downstream 53340 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060
TU58746 other downstream 53340 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060
TU58749 other downstream 53340 3202772 ~ 3208306 (+) False CI01000009_03202999_03207060
TU58750 other downstream 53340 3202772 ~ 3207486 (+) False CI01000009_03202999_03207060
TU58751 other downstream 53340 3202772 ~ 3208523 (+) False CI01000009_03202999_03207060

Expression Profile