Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU59805 |
| length | 984 |
| lncRNA type | antisense_over |
| GC content | 0.45 |
| exon number | 5 |
| gene id | G52496 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 3202765 ~ 3207426 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU59800 | lncRNA | downstream | 46619 | 3150263 ~ 3156146 (-) | True | G52494 |
| TU59910 | lncRNA | downstream | 53333 | 3147928 ~ 3149432 (-) | True | G52589 |
| TU59836 | lncRNA | downstream | 120328 | 3081991 ~ 3082437 (-) | True | G52518 |
| TU59887 | lncRNA | downstream | 131377 | 3071161 ~ 3071388 (-) | True | G52566 |
| TU59878 | lncRNA | downstream | 153112 | 3049098 ~ 3049653 (-) | True | G52557 |
| TU59839 | lncRNA | upstream | 13306 | 3220732 ~ 3221942 (-) | True | G52521 |
| TU59914 | lncRNA | upstream | 15206 | 3222632 ~ 3222961 (-) | True | G52593 |
| TU59913 | lncRNA | upstream | 16064 | 3223490 ~ 3223799 (-) | True | G52592 |
| TU59831 | lncRNA | upstream | 71318 | 3278744 ~ 3279333 (-) | True | G52513 |
| TU59811 | lncRNA | upstream | 79892 | 3287318 ~ 3290823 (-) | False | G52501 |
| CI01000009_03171440_03194494.mRNA | mRNA | downstream | 7620 | 3171440 ~ 3195145 (-) | True | CI01000009_03171440_03194494 |
| CI01000009_03140599_03143635.mRNA | mRNA | downstream | 59130 | 3140599 ~ 3143635 (-) | True | CI01000009_03140599_03143635 |
| CI01000009_03009238_03025860.mRNA | mRNA | downstream | 176828 | 3008360 ~ 3025937 (-) | False | CI01000009_03009238_03025860 |
| CI01000009_03006152_03007243.mRNA | mRNA | downstream | 194910 | 3005386 ~ 3007855 (-) | False | CI01000009_03006152_03007243 |
| CI01000009_02975388_02982670.mRNA | mRNA | downstream | 217374 | 2975388 ~ 2985391 (-) | False | CI01000009_02975388_02982670 |
| CI01000009_03226613_03234223.mRNA | mRNA | upstream | 18342 | 3225768 ~ 3234223 (-) | True | CI01000009_03226613_03234223 |
| CI01000009_03235111_03242103.mRNA | mRNA | upstream | 27588 | 3235014 ~ 3242103 (-) | True | CI01000009_03235111_03242103 |
| CI01000009_03244366_03259106.mRNA | mRNA | upstream | 36172 | 3243598 ~ 3259106 (-) | True | CI01000009_03244366_03259106 |
| CI01000009_03261739_03262843.mRNA | mRNA | upstream | 53612 | 3261038 ~ 3262843 (-) | False | CI01000009_03261739_03262843 |
| CI01000009_03264437_03267242.mRNA | mRNA | upstream | 57011 | 3264437 ~ 3267242 (-) | True | CI01000009_03264437_03267242 |
| TU59711 | other | downstream | 303358 | 2899254 ~ 2899407 (-) | True | G52415 |
| TU59706 | other | downstream | 640232 | 2551724 ~ 2562533 (-) | True | G52410 |
| TU59630 | other | downstream | 962001 | 2240693 ~ 2240764 (-) | True | CI01000009_02239426_02240738 |
| TU59814 | other | upstream | 53777 | 3261203 ~ 3261957 (-) | True | CI01000009_03261739_03262843 |
| TU60172 | other | upstream | 1009994 | 4217420 ~ 4231469 (-) | True | G52828 |
| TU60944 | other | upstream | 2294969 | 5502395 ~ 5505248 (-) | False | G53515 |
| TU63500 | other | upstream | 5218395 | 8425821 ~ 8428012 (-) | True | G55814 |
| TU64878 | other | upstream | 5650726 | 8858152 ~ 8860563 (-) | True | CI01000009_08858198_08860555 |
